Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01135 ATGGACGGAGAACTGCCGCCGGCATCGGCACCGGCTCCGGCTCCGGCTCCACTGTCCATCCATCCTGCCGTAACACCGCTATCATTCTTACTCGGAACATGGAGAGGCAAAGGCGAAGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAACTTCACTTCTCCCATTCTGGCAAGCCAGTGATTTCCTACAGTCAAAAGACATGGAAACTCGATTCTAAAGAGCCAATGCATGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTCTCGTTGAAGTTCAGAAAGGAACCTACAATGCAGAAGAGAAAGTGATAAAGCTTCAAAGCGAACTTGTGGGAAATGCTTCTAAGGTGAAAGAAATAAGCAGAGTGTTTAAATTGGTGGATGGAGAGCTTTCCTACGTGGTTCAGATGGCTACTACCTTAACCAGTCTTCAACCACACTTAAAAGCCTTGCTCACTAAAGTTTGA 513 48.15 MDGELPPASAPAPAPAPLSIHPAVTPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSGKPVISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVKEISRVFKLVDGELSYVVQMATTLTSLQPHLKALLTKV* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9427415 9432063 + CsaV3_6G013330.1 Csa06g01135 532762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01135 170 CDD lipocalin_heme-bd-THAP4-like 24 170 IPR014878 -
Csa06g01135 170 SUPERFAMILY Lipocalins 19 170 IPR012674 -
Csa06g01135 170 Hamap Peroxynitrite isomerase. 16 170 IPR022939 -
Csa06g01135 170 PANTHER THAP4 PROTEIN 9 170 IPR045165 -
Csa06g01135 170 Pfam THAP4-like, heme-binding beta-barrel domain 24 169 IPR014878 -
Csa06g01135 170 Gene3D - 19 170 IPR012674 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01135 - - K23205 csv:101218771 327.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1189 . . . . . . . . . . . . . . . . Cpe16g00699 . . . . . . . Cla02g01845 Cam02g1952 Cec02g1980 Cco02g2018 Clacu02g1934 Cmu02g1883 Cre02g2194 . . . . . . . Cme11g01662 . . . . . . . . Sed05g3323 . . . . . . . . Bhi10g00914 Tan05g0568 Cmetu11g1408 . Hepe08g0663 . . . . . . . . . . Csa06g01135 Chy11g01057 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014028 0 1 0 0 0 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01135 Csa_Chr06 FPKM 4.306761 5.827586 4.333679 4.494778 2.096374 1.882218 2.354833 5.998304 4.930729 5.879446