Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01136 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCAAATTTTTGTTTCTTCTTCTTCTTCTTCCTCCTTTTCTTCTTCTTATCCTTCTCCTCCTCTTTCCTCTTTGCATTGGGCGACGAAGACAACAACTTCAACAACAATAATAATATTAATGACGACGAAGATGAGCAAGAGATAATCAAATTCGATCTTCTTCACCGTCACCATCCACAAGTCGCGGAAAAGATTCACGGTGATATGAAAATCCAAGATGTAAGCGAAAGAATGAAAGACATTCACGAACACGACCACAATCGTCACCGCTCCATCTCCAAATCGATGAACCAGAAGCAAGTTGAGGATGCGAGATTGAGGGCAGAGGCAGAGGCGGCGACAGAGGAAGAGGTAGCAAAGAGTGCAATACTTCCACCGGCAACGTCGACGCCGATAGGAATGAGGATGATTTCGGGTGCAGATTTCGGGAGTAGTGAGTATTTCGTAGAGTTGAAGGTGGGAACGCCGGCGCAAACGTTTATGTTGATTGCGGATACAGGGAGTGATTTAACGTGGATGAAATGTAGATATCGGAGGTGTTTTGGGAATTGTAGCAGTAACGTGAATCATAAAAGCAAAAATGAAAAGAAACAGAGATTTAGACATGCTTTCTTGGCGAATCATTCGTCTTCTTTTAAGACGGTTTCTTGCAGCTCAACGATGTGTACCAATGATCTTGCGGATTTGTTTGCTGTTCGGGAATGCCACAACCCAACTAGTCCTTGTGTCTATGATTACAGCTACACTGGAGGAGCAAGTGCAAAGGGGATATTCGCATGGGAGACTCTAACCGTAGGCTTAACAAACGGAAAAGAAAAACAACTCCATAATTCCATAATTGGATGTACGGAATCCGTCCAAGGCAGCGTTTTCGGTGGTGCCGACGGCGTCATGGGCTTAGGCACTAGCTCCTATTCTTTAACCTACAAGGCCGCCGAAAACGCCAACGGCGGTGGCTTCTCTTACTGCCTTGTCGATCATCTCACCGATCAAAGAGCCATCAGTTACTTCGTCCTCGGCATTCCTACCCCTTCCACTTCCGCCTCCACCTCCTCCGCCAAACTTCCCGCCAAAATGACCTACACCAAACTCTACGTCGGCGACCCTTACAGCAGCTTCTACGGCGTCGATCTCATCGGTATCTCCGCCAACGGCATCATGCTCAACATCCCTTCCCGTGTTTGGGACATTAATTCCGGCGGCGGTACCATCATCGATTCCGGTACCAGTCTCACTATACTTGCGGCTCCTGCTTTCGACATGGTAATGGAAGCTCTAACTCCGAGATTGAAGAAATTTCAGCAACTTGAAATCGAACCTTTCGATTTTTGCTTCAATAACAGCCAGTACACTCACGAAATGGCGCCGAAGCTCCGATTCCATTTCGGTGACGGGACGGTGTTTGAGCCGCCGACGAAAAGCTACATTGTGTCGGTGGGGAAATTCATTAGCTGTATTGGGTTCGTTTCAATGCCTTTTCCGGCGAACAATATCATTGGAAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCCAAAAGAGAAGAGTCGGTTTTGCCCCTTCCGAATGCATCTAA 1614 46.47 MLGYRKPMSPISNFCFFFFFFLLFFFLSFSSSFLFALGDEDNNFNNNNNINDDEDEQEIIKFDLLHRHHPQVAEKIHGDMKIQDVSERMKDIHEHDHNRHRSISKSMNQKQVEDARLRAEAEAATEEEVAKSAILPPATSTPIGMRMISGADFGSSEYFVELKVGTPAQTFMLIADTGSDLTWMKCRYRRCFGNCSSNVNHKSKNEKKQRFRHAFLANHSSSFKTVSCSSTMCTNDLADLFAVRECHNPTSPCVYDYSYTGGASAKGIFAWETLTVGLTNGKEKQLHNSIIGCTESVQGSVFGGADGVMGLGTSSYSLTYKAAENANGGGFSYCLVDHLTDQRAISYFVLGIPTPSTSASTSSAKLPAKMTYTKLYVGDPYSSFYGVDLIGISANGIMLNIPSRVWDINSGGGTIIDSGTSLTILAAPAFDMVMEALTPRLKKFQQLEIEPFDFCFNNSQYTHEMAPKLRFHFGDGTVFEPPTKSYIVSVGKFISCIGFVSMPFPANNIIGNILQQNHLWQFDFQKRRVGFAPSECI* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9438292 9440694 + CsaV3_6G013340.1 Csa06g01136 532763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01136 537 Gene3D Acid Proteases 141 351 IPR021109 -
Csa06g01136 537 CDD pepsin_A_like_plant 157 536 IPR034161 -
Csa06g01136 537 Gene3D Acid Proteases 355 537 IPR021109 -
Csa06g01136 537 SUPERFAMILY Acid proteases 150 536 IPR021109 -
Csa06g01136 537 ProSiteProfiles Peptidase family A1 domain profile. 158 532 IPR033121 -
Csa06g01136 537 PANTHER OS07G0603500 PROTEIN-RELATED 19 536 - -
Csa06g01136 537 Pfam Xylanase inhibitor C-terminal 385 532 IPR032799 -
Csa06g01136 537 Pfam Xylanase inhibitor N-terminal 158 351 IPR032861 -
Csa06g01136 537 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 19 536 - -
Csa06g01136 537 Coils Coil 107 127 - -
Csa06g01136 537 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 173 184 IPR001969 GO:0004190|GO:0006508
Csa06g01136 537 PRINTS Pepsin (A1) aspartic protease family signature 164 184 IPR001461 GO:0004190|GO:0006508
Csa06g01136 537 PRINTS Pepsin (A1) aspartic protease family signature 414 425 IPR001461 GO:0004190|GO:0006508
Csa06g01136 537 PRINTS Pepsin (A1) aspartic protease family signature 508 523 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01136 - - - csv:101204452 996.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01136 Csa-Chr6:9438292 Csa04g02171 Csa-Chr4:22506947 8.01E-46 dispersed
Csa06g01136 Csa-Chr6:9438292 Csa01g00652 Csa-Chr1:4177916 1.05E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01136 Csa_Chr06 FPKM 24.102655 25.219229 48.813187 49.359711 19.885298 21.32785 20.907352 78.075432 80.489182 81.484253