Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01136 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCAAATTTTTGTTTCTTCTTCTTCTTCTTCCTCCTTTTCTTCTTCTTATCCTTCTCCTCCTCTTTCCTCTTTGCATTGGGCGACGAAGACAACAACTTCAACAACAATAATAATATTAATGACGACGAAGATGAGCAAGAGATAATCAAATTCGATCTTCTTCACCGTCACCATCCACAAGTCGCGGAAAAGATTCACGGTGATATGAAAATCCAAGATGTAAGCGAAAGAATGAAAGACATTCACGAACACGACCACAATCGTCACCGCTCCATCTCCAAATCGATGAACCAGAAGCAAGTTGAGGATGCGAGATTGAGGGCAGAGGCAGAGGCGGCGACAGAGGAAGAGGTAGCAAAGAGTGCAATACTTCCACCGGCAACGTCGACGCCGATAGGAATGAGGATGATTTCGGGTGCAGATTTCGGGAGTAGTGAGTATTTCGTAGAGTTGAAGGTGGGAACGCCGGCGCAAACGTTTATGTTGATTGCGGATACAGGGAGTGATTTAACGTGGATGAAATGTAGATATCGGAGGTGTTTTGGGAATTGTAGCAGTAACGTGAATCATAAAAGCAAAAATGAAAAGAAACAGAGATTTAGACATGCTTTCTTGGCGAATCATTCGTCTTCTTTTAAGACGGTTTCTTGCAGCTCAACGATGTGTACCAATGATCTTGCGGATTTGTTTGCTGTTCGGGAATGCCACAACCCAACTAGTCCTTGTGTCTATGATTACAGCTACACTGGAGGAGCAAGTGCAAAGGGGATATTCGCATGGGAGACTCTAACCGTAGGCTTAACAAACGGAAAAGAAAAACAACTCCATAATTCCATAATTGGATGTACGGAATCCGTCCAAGGCAGCGTTTTCGGTGGTGCCGACGGCGTCATGGGCTTAGGCACTAGCTCCTATTCTTTAACCTACAAGGCCGCCGAAAACGCCAACGGCGGTGGCTTCTCTTACTGCCTTGTCGATCATCTCACCGATCAAAGAGCCATCAGTTACTTCGTCCTCGGCATTCCTACCCCTTCCACTTCCGCCTCCACCTCCTCCGCCAAACTTCCCGCCAAAATGACCTACACCAAACTCTACGTCGGCGACCCTTACAGCAGCTTCTACGGCGTCGATCTCATCGGTATCTCCGCCAACGGCATCATGCTCAACATCCCTTCCCGTGTTTGGGACATTAATTCCGGCGGCGGTACCATCATCGATTCCGGTACCAGTCTCACTATACTTGCGGCTCCTGCTTTCGACATGGTAATGGAAGCTCTAACTCCGAGATTGAAGAAATTTCAGCAACTTGAAATCGAACCTTTCGATTTTTGCTTCAATAACAGCCAGTACACTCACGAAATGGCGCCGAAGCTCCGATTCCATTTCGGTGACGGGACGGTGTTTGAGCCGCCGACGAAAAGCTACATTGTGTCGGTGGGGAAATTCATTAGCTGTATTGGGTTCGTTTCAATGCCTTTTCCGGCGAACAATATCATTGGAAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCCAAAAGAGAAGAGTCGGTTTTGCCCCTTCCGAATGCATCTAA 1614 46.47 MLGYRKPMSPISNFCFFFFFFLLFFFLSFSSSFLFALGDEDNNFNNNNNINDDEDEQEIIKFDLLHRHHPQVAEKIHGDMKIQDVSERMKDIHEHDHNRHRSISKSMNQKQVEDARLRAEAEAATEEEVAKSAILPPATSTPIGMRMISGADFGSSEYFVELKVGTPAQTFMLIADTGSDLTWMKCRYRRCFGNCSSNVNHKSKNEKKQRFRHAFLANHSSSFKTVSCSSTMCTNDLADLFAVRECHNPTSPCVYDYSYTGGASAKGIFAWETLTVGLTNGKEKQLHNSIIGCTESVQGSVFGGADGVMGLGTSSYSLTYKAAENANGGGFSYCLVDHLTDQRAISYFVLGIPTPSTSASTSSAKLPAKMTYTKLYVGDPYSSFYGVDLIGISANGIMLNIPSRVWDINSGGGTIIDSGTSLTILAAPAFDMVMEALTPRLKKFQQLEIEPFDFCFNNSQYTHEMAPKLRFHFGDGTVFEPPTKSYIVSVGKFISCIGFVSMPFPANNIIGNILQQNHLWQFDFQKRRVGFAPSECI* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9438292 9440694 + CsaV3_6G013340.1 Csa06g01136 532763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01136 537 Gene3D Acid Proteases 141 351 IPR021109 -
Csa06g01136 537 CDD pepsin_A_like_plant 157 536 IPR034161 -
Csa06g01136 537 Gene3D Acid Proteases 355 537 IPR021109 -
Csa06g01136 537 SUPERFAMILY Acid proteases 150 536 IPR021109 -
Csa06g01136 537 ProSiteProfiles Peptidase family A1 domain profile. 158 532 IPR033121 -
Csa06g01136 537 PANTHER OS07G0603500 PROTEIN-RELATED 19 536 - -
Csa06g01136 537 Pfam Xylanase inhibitor C-terminal 385 532 IPR032799 -
Csa06g01136 537 Pfam Xylanase inhibitor N-terminal 158 351 IPR032861 -
Csa06g01136 537 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 19 536 - -
Csa06g01136 537 Coils Coil 107 127 - -
Csa06g01136 537 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 173 184 IPR001969 GO:0004190|GO:0006508
Csa06g01136 537 PRINTS Pepsin (A1) aspartic protease family signature 164 184 IPR001461 GO:0004190|GO:0006508
Csa06g01136 537 PRINTS Pepsin (A1) aspartic protease family signature 414 425 IPR001461 GO:0004190|GO:0006508
Csa06g01136 537 PRINTS Pepsin (A1) aspartic protease family signature 508 523 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01136 Csa-Chr6:9438292 Csa04g02171 Csa-Chr4:22506947 8.01E-46 dispersed
Csa06g01136 Csa-Chr6:9438292 Csa01g00652 Csa-Chr1:4177916 1.05E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01136 - - csv:101204452 996.497