Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01138 ATGAGGTTCATGGCTATGGCTTCTTCTTTTGCTCTCTTCTTCCTCCTTCATCTCCATTTCATTGTATCGTTGCCCGCCATTCAACCAGTACTTACCGTTGCCTCGGCAAGTCGTGCACCACCTTCGTCTGCAGCCTCTCTATTGTCGCATAACTTTTACCATCGAACATGCCCAGATGCCGAGGGCATCATTCATCGAAAAGTGCTAGCTTGGATCAACAAGGATTTCACATTGGCTCCGGCCCTCATTCGCTTGCATTTCCACGATTGCGCAGTTAGGGGATGCGATGGATCGATTCTACTAAACTATCGAAGAAGTGAAAGAGACGCCTTAGCCAGCAAAACCCTAAGAGGATTTTCAGTGATCGACGATATCAAGGCCGAACTCGAGCGAAAATGCCCTAAAACCGTCTCCTGCTCCGACATTCTCACTGCCGCCGCACGAGACGCCACCATTCTCGCCGGAGGCCCTTTCTGGGAGGTTCCATTCGGCCGTAAAGATGGCAAAATCTCCATCGCCGCCGAAGCAGAGAAAGTCCCTCAAGGCCACGAAAACGTCACTGCTTTGATCAATTACTTCCAATATCTAGGGCTCGACACTCTCGATTTAGTCGCCCTCTCCGGCGCCCATACCATTGGCCGAGCCGCCTGCCATACCTTCCAAGATAGGCTCTACAATTTCAATAGGACAGGAAGACCGGACCCGGTTCTGAAACCTCGATTTCTGAATATGCTTCGAAGGCAGTGCAAGAAGGGTATGGATTTGGTTTTTCTTGATGCGACGACTCCGAAAATGTTCGATACTGCTTATTTCACAAATCTTGAGAAGAAATTAGGGCTTCTGGTGACGGATCAAGCTCTGGTTTCGGATGAGAGAACTTCTTCGTTTGTGGATTTGATGGCGAATCAGCCGTTCCTTTTTGATAGCCAATTTTCTGCTTCGATGGTGAAATTGGGGAATGTGGGAGTTCTTACAAGGAAAAATGAAGGGGAAATTCGAGTTAATTGCAATTTCGTTAATCATAGAAGAAAGAAGTAA 1038 47.78 MRFMAMASSFALFFLLHLHFIVSLPAIQPVLTVASASRAPPSSAASLLSHNFYHRTCPDAEGIIHRKVLAWINKDFTLAPALIRLHFHDCAVRGCDGSILLNYRRSERDALASKTLRGFSVIDDIKAELERKCPKTVSCSDILTAAARDATILAGGPFWEVPFGRKDGKISIAAEAEKVPQGHENVTALINYFQYLGLDTLDLVALSGAHTIGRAACHTFQDRLYNFNRTGRPDPVLKPRFLNMLRRQCKKGMDLVFLDATTPKMFDTAYFTNLEKKLGLLVTDQALVSDERTSSFVDLMANQPFLFDSQFSASMVKLGNVGVLTRKNEGEIRVNCNFVNHRRKK* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9459660 9461675 + CsaV3_6G013360.1 Csa06g01138 532765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01138 345 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Csa06g01138 345 ProSitePatterns Peroxidases proximal heme-ligand signature. 202 212 IPR019793 -
Csa06g01138 345 ProSiteProfiles Plant heme peroxidase family profile. 47 340 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 SUPERFAMILY Heme-dependent peroxidases 48 340 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 117 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 136 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 155 170 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 201 213 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 257 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 273 290 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Plant peroxidase signature 313 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 Gene3D - 51 340 - -
Csa06g01138 345 PANTHER PEROXIDASE 25-RELATED 30 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 Pfam Peroxidase 67 302 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 Gene3D Peroxidase, domain 2 180 318 - -
Csa06g01138 345 CDD secretory_peroxidase 48 339 IPR033905 GO:0004601|GO:0042744
Csa06g01138 345 PANTHER PEROXIDASE 30 339 - -
Csa06g01138 345 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Haem peroxidase superfamily signature 137 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Haem peroxidase superfamily signature 155 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Haem peroxidase superfamily signature 202 217 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g01138 345 PRINTS Haem peroxidase superfamily signature 259 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00998 Csa-Chr1:6211462 Csa06g01138 Csa-Chr6:9459660 8.76E-139 dispersed
Csa06g01138 Csa-Chr6:9459660 Csa07g00375 Csa-Chr7:2787973 1.44E-84 dispersed
Csa06g01138 Csa-Chr6:9459660 Csa06g02923 Csa-Chr6:25335342 2.86E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01138 K00430 - csv:101204209 664.84