Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01139 ATGACCCAATCGCCGGTGCCTCCGTCCTTGGCTCCGCCGCACCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCTGGTTGTCGTGATGTTTTGGTAGTGGCGCCTGGTCATACTGAGTTCTTCTGTCCATCTTGTCAATTGCCTCAGATGTTGCCTCCTGAGCTTCTAGTTAGGGCCCACTCCAAGCCCCTTCCTCATCCTTCTCCTCCTCTACCGCCGCCTCCGCCTCCGCCGCCCTCGCTGCCTCTTCCCCTTCCTTTGTCCATACACCATGTTCCTGCTCATGGCATTGATCCTACCAAGATGCAGCTCCCTTGCGCTAATTGCAAAGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGTGCGGTTGACCTCGCTGTTGATGTTTCCAAGCTACATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAAGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACGTTTACTGAATATCACCCTCCCAAGCTATCTATAGGACCACTTCACCCAGACCCAGTTGTGGAGACATCATCTTTAGCTGCTGTCCAGCCTCCTGAACCCACTTATCATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTGCAAATTGAGACCTTGGTATATGCTTCTCAGAGACATATGCACCATCTCCCCAATGATACCAGGGCGGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACCATTGCAGGTTTATTATGGGAAAATTGGCACCATGGGAGGAGGAAATCATTGTGGATTTCGGTTGGTTCAGATTTGAAGTATGATGCTAGGAGAGACTTAGATGATGTAGGTGCAGCGTGCATTAAAGTGCATGCTTTGAACAAGCTGCCTTATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTATCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAACGAGGCCGTTCTCGCCTACAGCAGCTTGTTCAATGGTGTGGAACAGAATTTGATGGTCTCATCATATTTGATGAGTGTCATAAAGCAAAAAATTTGGTACCAGAATCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCGTCTGAGCCACGGAATATGGGCTATATGGTCCGCCTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCCGCGATTTTTTAGGTGCGTTGGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATCTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGACATTGTGGAAGCACCGTTGGAAGCTGAGATGATGGAAATGTATACATTAGCTGCTGAATTTTGGGCAAAGTTGCGATTAGAATTGATGACAGCAAGTGCTTATGTTACTAGTGACAAGCCTAGCACCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCGAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCCTGCAAAGTACTGGAGAGGCACGCACGGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTACCCGAAAAGCCTGAAACCCTACCTGAGGAGGGAAGTGTGAAGGAGCTTCAAAGGAAGAGACACTCTGCAACTCCTGGCATGTCACTAAATGGGAGGTTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGCGATGTCGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCTGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGGGGAAAGGAAAAAATTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCACCCTGCCTGTCTCGACCCACCTCCCTTGGACACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAAGAAAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTGTAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCTGATCGTAAGTCTAATTTGCTAGCAATTATCCGTTCACTGAATCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGTGGTCCTGATAAGGTTGCGGAAATTACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAATGGGAAGGGTGTTACATACCAGCCACGGAATTCGAAGGATGTGACTATGGAGATGGTCAATATGCATGAGAAACAACTGTTTATGGATGGTCAGAAGTTTGTTGCCATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCAGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGAACTCATCGCTCTAATCAAACTTCAGCACCCGAATACAGGCTTCTTTTTACGAATCTTGGTGGAGAACGGAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCGCTTGGAGCCTTAACTCAAGGAGATCGAAGAGCTGGGTTGTCATTAAGTGCATATAATTATGACAGTGCTTATGGAAAAACCGCCTTGACGATGATGTATAGAGGAATATTGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGAGACAATTCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATCAGGGACACCGTACTTGCAACTGGGAAGGACTTTGGAAAGAGCTCTAGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCTCCTGACATTCAGAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAAAAGGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTGTTGAATTACGAGGAAGTCCAAAGACAGTTCACGTTGATCCTGTCTCTGGGGCATCTACCATGCTGTTTACTTTCTCTTTGGATCGTGGTGTGACCTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTTTATGAATCCAGGAGGGATTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTTCGGCCAGCTATTGGGGAGTCATTGAGGGAAATGTCTCTCTCCGAGTTACGAAACAAATATCGGAAAACGTCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCGAAACAGTGCATGCATGGACCGAAGTGTAAGCTTGGCAACTTCTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTAGGTGGCCTTATTCTTCCTGTGTGGGGAACTATTGAAAATGCTCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGCATAGAAACTACAACAGATAAACAGAGAATAGTTGGACTGTTTGTACCAAATGCAGCAGTTGAATCAGTGCTTCGAGGTTTGGCATGGGTACAAGATGTAGATGATTGA 3804 45.24 MTQSPVPPSLAPPHPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPHPSPPLPPPPPPPPSLPLPLPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEVAIEVEREEDEGGTVGETFTEYHPPKLSIGPLHPDPVVETSSLAAVQPPEPTYHLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKSLWISVGSDLKYDARRDLDDVGAACIKVHALNKLPYSKLDSKSVGIREGVIFLTYSSLIASSERGRSRLQQLVQWCGTEFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFDIVEAPLEAEMMEMYTLAAEFWAKLRLELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGMSLNGRLRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEGERKKLLRCSCCEQLFHPACLDPPPLDTETAEWSCQSCKEKTDEYLKERKAVVAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGQKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQTSAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGILEQDALPVEPPGCSSEKPETIRDFIENAKAALNSVGIIRDTVLATGKDFGKSSSRIVESDMNDIGRFLNRLLGLPPDIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVVELRGSPKTVHVDPVSGASTMLFTFSLDRGVTWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAIGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLAWVQDVDD* 1268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9464269 9492387 - CsaV3_6G013370.1 Csa06g01139 532766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01139 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 812 912 IPR027417 -
Csa06g01139 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 729 IPR013083 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 601 662 - -
Csa06g01139 1267 Pfam PHD-finger 668 716 IPR019787 -
Csa06g01139 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 431 IPR027417 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 66 86 - -
Csa06g01139 1267 PANTHER STRAWBERRY NOTCH-RELATED 22 1267 IPR026741 GO:0006355
Csa06g01139 1267 SUPERFAMILY FYVE/PHD zinc finger 658 719 IPR011011 -
Csa06g01139 1267 SMART PHD_3 668 714 IPR001965 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 647 662 - -
Csa06g01139 1267 ProSiteProfiles Zinc finger PHD-type profile. 666 716 IPR019787 -
Csa06g01139 1267 ProSitePatterns Zinc finger PHD-type signature. 669 713 IPR019786 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 62 86 - -
Csa06g01139 1267 Gene3D - 218 418 IPR027417 -
Csa06g01139 1267 Pfam P-loop containing NTP hydrolase pore-1 189 487 IPR039187 -
Csa06g01139 1267 PANTHER OS08G0223700 PROTEIN 22 1267 - -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 601 621 - -
Csa06g01139 1267 Pfam C-terminal domain on Strawberry notch homologue 757 1046 IPR026937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01139 - - - csv:101218295 2400.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31983 PF13872 AAA_34 8.70E-133 CL0023 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01139 Csa_Chr06 FPKM 11.909283 9.927091 5.19746 6.153943 0.652207 1.065664 0.644309 11.578572 12.271781 10.034482