Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01139 ATGACCCAATCGCCGGTGCCTCCGTCCTTGGCTCCGCCGCACCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCTGGTTGTCGTGATGTTTTGGTAGTGGCGCCTGGTCATACTGAGTTCTTCTGTCCATCTTGTCAATTGCCTCAGATGTTGCCTCCTGAGCTTCTAGTTAGGGCCCACTCCAAGCCCCTTCCTCATCCTTCTCCTCCTCTACCGCCGCCTCCGCCTCCGCCGCCCTCGCTGCCTCTTCCCCTTCCTTTGTCCATACACCATGTTCCTGCTCATGGCATTGATCCTACCAAGATGCAGCTCCCTTGCGCTAATTGCAAAGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGTGCGGTTGACCTCGCTGTTGATGTTTCCAAGCTACATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAAGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACGTTTACTGAATATCACCCTCCCAAGCTATCTATAGGACCACTTCACCCAGACCCAGTTGTGGAGACATCATCTTTAGCTGCTGTCCAGCCTCCTGAACCCACTTATCATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTGCAAATTGAGACCTTGGTATATGCTTCTCAGAGACATATGCACCATCTCCCCAATGATACCAGGGCGGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACCATTGCAGGTTTATTATGGGAAAATTGGCACCATGGGAGGAGGAAATCATTGTGGATTTCGGTTGGTTCAGATTTGAAGTATGATGCTAGGAGAGACTTAGATGATGTAGGTGCAGCGTGCATTAAAGTGCATGCTTTGAACAAGCTGCCTTATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTATCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAACGAGGCCGTTCTCGCCTACAGCAGCTTGTTCAATGGTGTGGAACAGAATTTGATGGTCTCATCATATTTGATGAGTGTCATAAAGCAAAAAATTTGGTACCAGAATCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCGTCTGAGCCACGGAATATGGGCTATATGGTCCGCCTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCCGCGATTTTTTAGGTGCGTTGGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATCTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGACATTGTGGAAGCACCGTTGGAAGCTGAGATGATGGAAATGTATACATTAGCTGCTGAATTTTGGGCAAAGTTGCGATTAGAATTGATGACAGCAAGTGCTTATGTTACTAGTGACAAGCCTAGCACCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCGAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCCTGCAAAGTACTGGAGAGGCACGCACGGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTACCCGAAAAGCCTGAAACCCTACCTGAGGAGGGAAGTGTGAAGGAGCTTCAAAGGAAGAGACACTCTGCAACTCCTGGCATGTCACTAAATGGGAGGTTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGCGATGTCGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCTGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGGGGAAAGGAAAAAATTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCACCCTGCCTGTCTCGACCCACCTCCCTTGGACACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAAGAAAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTGTAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCTGATCGTAAGTCTAATTTGCTAGCAATTATCCGTTCACTGAATCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGTGGTCCTGATAAGGTTGCGGAAATTACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAATGGGAAGGGTGTTACATACCAGCCACGGAATTCGAAGGATGTGACTATGGAGATGGTCAATATGCATGAGAAACAACTGTTTATGGATGGTCAGAAGTTTGTTGCCATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCAGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGAACTCATCGCTCTAATCAAACTTCAGCACCCGAATACAGGCTTCTTTTTACGAATCTTGGTGGAGAACGGAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCGCTTGGAGCCTTAACTCAAGGAGATCGAAGAGCTGGGTTGTCATTAAGTGCATATAATTATGACAGTGCTTATGGAAAAACCGCCTTGACGATGATGTATAGAGGAATATTGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGAGACAATTCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATCAGGGACACCGTACTTGCAACTGGGAAGGACTTTGGAAAGAGCTCTAGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCTCCTGACATTCAGAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAAAAGGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTGTTGAATTACGAGGAAGTCCAAAGACAGTTCACGTTGATCCTGTCTCTGGGGCATCTACCATGCTGTTTACTTTCTCTTTGGATCGTGGTGTGACCTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTTTATGAATCCAGGAGGGATTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTTCGGCCAGCTATTGGGGAGTCATTGAGGGAAATGTCTCTCTCCGAGTTACGAAACAAATATCGGAAAACGTCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCGAAACAGTGCATGCATGGACCGAAGTGTAAGCTTGGCAACTTCTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTAGGTGGCCTTATTCTTCCTGTGTGGGGAACTATTGAAAATGCTCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGCATAGAAACTACAACAGATAAACAGAGAATAGTTGGACTGTTTGTACCAAATGCAGCAGTTGAATCAGTGCTTCGAGGTTTGGCATGGGTACAAGATGTAGATGATTGA 3804 45.24 MTQSPVPPSLAPPHPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPHPSPPLPPPPPPPPSLPLPLPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEVAIEVEREEDEGGTVGETFTEYHPPKLSIGPLHPDPVVETSSLAAVQPPEPTYHLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKSLWISVGSDLKYDARRDLDDVGAACIKVHALNKLPYSKLDSKSVGIREGVIFLTYSSLIASSERGRSRLQQLVQWCGTEFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFDIVEAPLEAEMMEMYTLAAEFWAKLRLELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGMSLNGRLRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEGERKKLLRCSCCEQLFHPACLDPPPLDTETAEWSCQSCKEKTDEYLKERKAVVAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGQKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQTSAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGILEQDALPVEPPGCSSEKPETIRDFIENAKAALNSVGIIRDTVLATGKDFGKSSSRIVESDMNDIGRFLNRLLGLPPDIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVVELRGSPKTVHVDPVSGASTMLFTFSLDRGVTWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAIGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLRGLAWVQDVDD* 1268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9464269 9492387 - CsaV3_6G013370.1 Csa06g01139 532766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01139 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 812 912 IPR027417 -
Csa06g01139 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 729 IPR013083 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 601 662 - -
Csa06g01139 1267 Pfam PHD-finger 668 716 IPR019787 -
Csa06g01139 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 431 IPR027417 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 66 86 - -
Csa06g01139 1267 PANTHER STRAWBERRY NOTCH-RELATED 22 1267 IPR026741 GO:0006355
Csa06g01139 1267 SUPERFAMILY FYVE/PHD zinc finger 658 719 IPR011011 -
Csa06g01139 1267 SMART PHD_3 668 714 IPR001965 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 647 662 - -
Csa06g01139 1267 ProSiteProfiles Zinc finger PHD-type profile. 666 716 IPR019787 -
Csa06g01139 1267 ProSitePatterns Zinc finger PHD-type signature. 669 713 IPR019786 -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 62 86 - -
Csa06g01139 1267 Gene3D - 218 418 IPR027417 -
Csa06g01139 1267 Pfam P-loop containing NTP hydrolase pore-1 189 487 IPR039187 -
Csa06g01139 1267 PANTHER OS08G0223700 PROTEIN 22 1267 - -
Csa06g01139 1267 MobiDBLite consensus disorder prediction 601 621 - -
Csa06g01139 1267 Pfam C-terminal domain on Strawberry notch homologue 757 1046 IPR026937 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31983 PF13872 AAA_34 8.70E-133 CL0023 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01139 - - csv:101218295 2400.16