Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01141 ATGCCCTTAACCTGGTTGAGCAATATGGGTAGCCGGGTCAGCTCGTCGGCTAAACGGAGCAACGGCGGTGTAAAGAGTGGAAAAACGGGTGGCGTAGGGAAAGAAGCGTCGGTTAAGAAGAGTGACAGCGGCGGGGGAGGAAGTAGTCGTGGGAAGTCGTTGTGGCGGCCTGAGACGAAGGTTAATTTTCCGAAGAAATATGGTTTCATAGCGGATAACTTCTCCTCTGTTGACCAGGTTACCTCCGCATTGAGGAAAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTGCAGTATCCTTCAATAAACGGAGCTTGCACGCCCTTTCCGATTCTCCTAATCCCTACCAGAAGGCTCTGTCCATCATCGGGAAAACTCTGGCTCCCTTCGATGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGTGACGCTACGACGCACGATCAATTGGTGTTCAGTTTTCACAATGACAATTCACCATGCCATGGATTTGAAGAAGTTCTTGACTGTTACAAAAACATAATTCCCAATGCTCAACTTTCAGGACCAACTTCTTACGGTCCTGTTGTTGAAGCTGCAATGGATATCGTGGAGAAGAGTGGTGGCCAATTTCATATTCTTCTCATTGTTGCTGACGGACAGGTTACTCGAAGCTCCCTTTTTCGCGATGGTGAATTGAGCGCTCAAGAGGAGAAAACAATCAAAGCAATTGTGGATGCAAGTGCATATCCTCTTTCAATCATTCTGGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTTGATGACAAGATTCCAGCTCGCGATTTCGATAATTTCCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAACATTGGCGTGGCGGAAAAAGAAGCAGCTTTTGCTTTAGCTGCATTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATGGGACGTGTGACAGGGAAAGCAAGACATATTGTGCCACGACCCCCACCGACATGTTATACTCGTTCTACACGACTTACTTCTACACCAAGCGACACCTCCTCAACTTCTGCATCTGATGAACATAGTCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGACTTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGTCAGCCTATCAGAAACCGAATAAGGCTGTATACTGGGTGA 1260 46.83 MPLTWLSNMGSRVSSSAKRSNGGVKSGKTGGVGKEASVKKSDSGGGGSSRGKSLWRPETKVNFPKKYGFIADNFSSVDQVTSALRKEGLESSNLIVGIDFTKSNEWTGAVSFNKRSLHALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQLVFSFHNDNSPCHGFEEVLDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSLFRDGELSAQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNIGVAEKEAAFALAALMEVPFQYKAVTEMGLMGRVTGKARHIVPRPPPTCYTRSTRLTSTPSDTSSTSASDEHSQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTG* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9497206 9506310 + CsaV3_6G013390.1 Csa06g01141 532768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01141 419 MobiDBLite consensus disorder prediction 348 368 - -
Csa06g01141 419 SMART VWA_4 91 294 IPR002035 -
Csa06g01141 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 418 IPR013083 -
Csa06g01141 419 ProSiteProfiles Zinc finger RING-type profile. 374 407 IPR001841 -
Csa06g01141 419 MobiDBLite consensus disorder prediction 1 23 - -
Csa06g01141 419 MobiDBLite consensus disorder prediction 1 55 - -
Csa06g01141 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 49 418 - -
Csa06g01141 419 CDD RING-HC_RGLG_plant 373 417 IPR045317 GO:0061630|GO:0070534
Csa06g01141 419 Pfam Zinc finger, C3HC4 type (RING finger) 372 411 - -
Csa06g01141 419 MobiDBLite consensus disorder prediction 347 368 - -
Csa06g01141 419 SUPERFAMILY vWA-like 93 274 IPR036465 -
Csa06g01141 419 Pfam Copine 116 329 IPR010734 -
Csa06g01141 419 PANTHER COPINE FAMILY PROTEIN 1 49 418 - -
Csa06g01141 419 SUPERFAMILY RING/U-box 370 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01141 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101218058 794.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02262 Csa-Chr5:25249531 Csa06g01141 Csa-Chr6:9497206 1.52E-155 dispersed
Csa06g01141 Csa-Chr6:9497206 Csa06g02741 Csa-Chr6:23950544 1.27E-154 dispersed
Csa06g01141 Csa-Chr6:9497206 Csa05g01880 Csa-Chr5:22018130 6.54E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01141 Csa_Chr06 FPKM 52.14851 58.841553 38.621647 43.154705 57.934139 52.682972 56.191277 83.075722 79.387245 78.45063