Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01144 ATGGCTCCCATGACACTTCCTCCAGGGTTTCGCTTCCACCCGACAGACGAAGAACTTGTTGCTTACTATTTGGATAGGAAGATCAATGGCCGCTCCATCGAGCTTGAGATCATTCCTGAGATCGACCTTTATAAATGCGAACCCTGGGAATTACCCGATAAGTCGTTTTTGCCGAGCAAAGATATGGAGTGGTACTTCTATAGTCCTCGGGATCGGAAGTACCCTAATGGGTCGAGAACAAATCGAGCGACGAAAGGCGGGTATTGGAAGGCCACTGGGAAAGACCGAGTGGTTCAGTCGCAGAAGCGAGCAGTTGGGATGAAGAAAACTTTGGTGTATTATAAAGGAAGAGCTCCTCATGGGGTTAGAACTAATTGGGTTATGCATGAATATCGTCTTCTCCATTCTCAACTTGCCACCGCAACAACGTCGTCTCCTTCGACCAAGGACTCCTATGCGTTGTGTCGTGTATTCAAGAAGGCAACTATAGTACCGAAAACGGTTGGGGAAAAGACAAATGGGGTCGACCCCGAAGCACCGGTTTGGCAAATGGCGGACGAGCAAGACATGCAGGTTGACGATGGTGGTGGTGCGCCAGAAAGTTCGAGAGGAGGGATAGAAAGCAATGAAGATGGTGACAGTTTTGATCATTTTCTTTATGAATATAACCCTAAAATCTTCAGCTCTGAAAACTCCTCCTCCGATCTCACACAAGGAAATGTCGCCGATGACTTGCCGGTGCTGGTGACCTCCGATAATGAAGCCAATAGTTCAGCTGATAATCTGTATCCAATCCACATTGATTGCCCTTCAAATTATATGCAGATTCCAAACAATTTTATTGAGCACGAGAATAATCTTCACTATCAACATCCTTACTATCCACCGTTAGAGGTCGAGGACTTCCCGCAGCTAAACATAATGGGGGAAACAAAGTCGTTAATGAAGCCCGAGTGTATGGACGAGTACATGAAGTCGTTCGATAAGTTCAGAGACTCCATGAATGGAAGTTTAGAGGAGATTTTGTCACTGTGTAGTCTTCCCAATATGCAAGAAGATAATCATAATCTCCAACAACACTCTTCCTTATTACAGTAA 1098 45.36 MAPMTLPPGFRFHPTDEELVAYYLDRKINGRSIELEIIPEIDLYKCEPWELPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATKGGYWKATGKDRVVQSQKRAVGMKKTLVYYKGRAPHGVRTNWVMHEYRLLHSQLATATTSSPSTKDSYALCRVFKKATIVPKTVGEKTNGVDPEAPVWQMADEQDMQVDDGGGAPESSRGGIESNEDGDSFDHFLYEYNPKIFSSENSSSDLTQGNVADDLPVLVTSDNEANSSADNLYPIHIDCPSNYMQIPNNFIEHENNLHYQHPYYPPLEVEDFPQLNIMGETKSLMKPECMDEYMKSFDKFRDSMNGSLEEILSLCSLPNMQEDNHNLQQHSSLLQ* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9536058 9540856 + CsaV3_6G013420.1 Csa06g01144 532771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01144 365 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Csa06g01144 365 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Csa06g01144 365 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Csa06g01144 365 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 175 - -
Csa06g01144 365 MobiDBLite consensus disorder prediction 190 210 - -
Csa06g01144 365 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 175 - -
Csa06g01144 365 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01423 Csa-Chr5:15329563 Csa06g01144 Csa-Chr6:9536058 4.83E-91 dispersed
Csa07g01087 Csa-Chr7:10429697 Csa06g01144 Csa-Chr6:9536058 6.74E-59 dispersed
Csa07g01286 Csa-Chr7:12793733 Csa06g01144 Csa-Chr6:9536058 7.03E-62 dispersed
Csa06g01144 Csa-Chr6:9536058 Csa02g01679 Csa-Chr2:16018810 4.58E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31984 PF02365 NAM 1.60E-39 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01144 - - csv:101203964 764.992