Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01145 | ATGTACCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTTCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTTGTCGACGCTGTCACTCAACTTGGTGGCCCTGATAAAGCTACCCCTAAGACCATCATGCGGGTTATGGGTGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCATCTTCAGAAGTTCAGACTTGGAAAGCAACCTCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGTATGAACGAAATGCATATGGAGGTCCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAATACATGCAAAGCATACTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAATATAGCCGCAGCCACCGCCGCCTCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAACCTTGTCTCAGACGCCGCCATCAAAGACTTCATTTCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCTGACCCGCCACCACCTCCGCCGCCTCTCATTGACTGCCTCAAAAAGCCCAGCCCCTTCATCTCTGGGGCCGGTAAGACCCCCATTTTCTGGCCAGACGATCTCCGGCTCCAAGACTTAGGAACTCCTTCTGCCACCTTAGCACCCGCGCCCCCTCCCATCGGTGGCCCACCCGACTTGGACTCTCTACAGTTGGAAATGTATGAATCCAAACCGCCACCACCAACGCCGCTACTCGCTGTTGGCAACAACGCCATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGACCATCCCCACCGCGATCGGGACATTCGGATGAAAGGGTGAATAATAATAATAATGGTATGGCTAACAATAACAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA | 1092 | 50.0 | MYHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSTLMDRSMNEMHMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENIAAATAASAGPFKTTSNNMGTTTNLVSDAAIKDFISPHHTFPPFQDMNNLFNSDPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPAPPPIGGPPDLDSLQLEMYESKPPPPTPLLAVGNNAMNEKKFDMTLKLERPSPPRSGHSDERVNNNNNGMANNNNPTMSQPQGRNSSFG* | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9545350 | 9549020 | - | CsaV3_6G013430.1 | Csa06g01145 | 532772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01145 | 363 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Csa06g01145 | 363 | MobiDBLite | consensus disorder prediction | 318 | 363 | - | - | |
Csa06g01145 | 363 | Pfam | Myb-like DNA-binding domain | 36 | 84 | IPR001005 | - | |
Csa06g01145 | 363 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Csa06g01145 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 2 | 226 | IPR044848 | GO:0003700 | |
Csa06g01145 | 363 | Gene3D | - | 32 | 90 | - | - | |
Csa06g01145 | 363 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Csa06g01145 | 363 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677 | |
Csa06g01145 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 2 | 226 | - | - | |
Csa06g01145 | 363 | MobiDBLite | consensus disorder prediction | 332 | 363 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa06g01145 | Csa07g01218 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01095 | Csa-Chr3:8674955 | Csa06g01145 | Csa-Chr6:9545350 | 1.48E-67 | dispersed | |
Csa06g01145 | Csa-Chr6:9545350 | Csa06g03415 | Csa-Chr6:28239422 | 5.39E-46 | dispersed | |
Csa03g02731 | Csa-Chr3:26150638 | Csa06g01145 | Csa-Chr6:9545350 | 4.85E-50 | transposed | |
Csa03g02937 | Csa-Chr3:27980949 | Csa06g01145 | Csa-Chr6:9545350 | 5.51E-22 | transposed | |
Csa03g04029 | Csa-Chr3:35194253 | Csa06g01145 | Csa-Chr6:9545350 | 7.26E-57 | transposed | |
Csa06g01145 | Csa-Chr6:9545350 | Csa07g01218 | Csa-Chr7:11974425 | 2.66E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31985 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01145 | - | - | csv:101203721 | 696.812 |