Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01145 ATGTACCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTTCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTTGTCGACGCTGTCACTCAACTTGGTGGCCCTGATAAAGCTACCCCTAAGACCATCATGCGGGTTATGGGTGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCATCTTCAGAAGTTCAGACTTGGAAAGCAACCTCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGTATGAACGAAATGCATATGGAGGTCCAGAGACGACTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAATACATGCAAAGCATACTGGAGAAAGCTTGCCAAACCCTCGCCGGCGAAAATATAGCCGCAGCCACCGCCGCCTCCGCCGGACCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAACCTTGTCTCAGACGCCGCCATCAAAGACTTCATTTCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCTGACCCGCCACCACCTCCGCCGCCTCTCATTGACTGCCTCAAAAAGCCCAGCCCCTTCATCTCTGGGGCCGGTAAGACCCCCATTTTCTGGCCAGACGATCTCCGGCTCCAAGACTTAGGAACTCCTTCTGCCACCTTAGCACCCGCGCCCCCTCCCATCGGTGGCCCACCCGACTTGGACTCTCTACAGTTGGAAATGTATGAATCCAAACCGCCACCACCAACGCCGCTACTCGCTGTTGGCAACAACGCCATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGACCATCCCCACCGCGATCGGGACATTCGGATGAAAGGGTGAATAATAATAATAATGGTATGGCTAACAATAACAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1092 50.0 MYHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSTLMDRSMNEMHMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENIAAATAASAGPFKTTSNNMGTTTNLVSDAAIKDFISPHHTFPPFQDMNNLFNSDPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPAPPPIGGPPDLDSLQLEMYESKPPPPTPLLAVGNNAMNEKKFDMTLKLERPSPPRSGHSDERVNNNNNGMANNNNPTMSQPQGRNSSFG* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9545350 9549020 - CsaV3_6G013430.1 Csa06g01145 532772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01145 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Csa06g01145 363 MobiDBLite consensus disorder prediction 318 363 - -
Csa06g01145 363 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Csa06g01145 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Csa06g01145 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 226 IPR044848 GO:0003700
Csa06g01145 363 Gene3D - 32 90 - -
Csa06g01145 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Csa06g01145 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Csa06g01145 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 2 226 - -
Csa06g01145 363 MobiDBLite consensus disorder prediction 332 363 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01145 Csa07g01218 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01095 Csa-Chr3:8674955 Csa06g01145 Csa-Chr6:9545350 1.48E-67 dispersed
Csa06g01145 Csa-Chr6:9545350 Csa06g03415 Csa-Chr6:28239422 5.39E-46 dispersed
Csa03g02731 Csa-Chr3:26150638 Csa06g01145 Csa-Chr6:9545350 4.85E-50 transposed
Csa03g02937 Csa-Chr3:27980949 Csa06g01145 Csa-Chr6:9545350 5.51E-22 transposed
Csa03g04029 Csa-Chr3:35194253 Csa06g01145 Csa-Chr6:9545350 7.26E-57 transposed
Csa06g01145 Csa-Chr6:9545350 Csa07g01218 Csa-Chr7:11974425 2.66E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31985 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01145 - - csv:101203721 696.812