Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01146 ATGATCATGACGGTCACTGCTAGAGTAATCACAACAGTTCGATCATTGGTTCCATCCAGTCAAGTCCCTCTTCTACGTCCATCTTCTTATGTCTTAGCTGCCCAGAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTACGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCCTTAAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGAAAAAGGGAGACCGATGATGCTATTTCATCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGATTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTTTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTTTTCCGAAGAAGCAAAGCGAGTATACGGTGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGCATCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCTGGTGTCGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACTTTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCCTGCATAATATTTGACGATGCGGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGAGACGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTACAGAAGGTTGAGAAATTTCTTCAAGATGCCACTACAAAGGGAGCGAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCAAATGACACCAATGCAGGATTAGCTGCTTACATATTCACTAATAATATTCAACGTTCGTGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGTGTTAAACAGTCAGGCCTTGGAAGGGAGGGGTCGAAATATGGGATGGACGAGTATCTTGAGTTGAAATATGTTTGCTTGGGGAATATGGACCGCCAATGA 1626 45.08 MIMTVTARVITTVRSLVPSSQVPLLRPSSYVLAAQKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTLKVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEELGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGIITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRQ* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9553079 9570338 - CsaV3_6G013440.1 Csa06g01146 532773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01146 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491
Csa06g01146 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Csa06g01146 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Csa06g01146 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Csa06g01146 541 SUPERFAMILY ALDH-like 61 539 IPR016161 GO:0016491
Csa06g01146 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Csa06g01146 541 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013|GO:0009450
Csa06g01146 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Csa06g01146 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
Csa06g01146 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01146 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00266 Csa-Chr2:1824868 Csa06g01146 Csa-Chr6:9553079 3.22E-58 dispersed
Csa02g00312 Csa-Chr2:2115327 Csa06g01146 Csa-Chr6:9553079 6.66E-103 dispersed
Csa06g01146 Csa-Chr6:9553079 Csa07g02347 Csa-Chr7:21717182 2.86E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02053 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 7.5e-212 733.4
Csa02g00312 . 56 541 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 2.8e-158 555.4
Csa01g00160 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 3.2e-154 542.0
Csa01g00160 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 2.2e-254 874.8
Csa02g00312 . 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 1.8e-248 855.1
Csa01g02053 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 54.9 2.5e-160 562.4
Csa02g00312 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 75.4 3.4e-170 594.7
Csa01g00160 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.4 1.7e-166 582.4
Csa01g02053 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 1.5e-101 366.7
Csa04g01789 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 1.8e-179 625.9
Csa04g01789 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.6e-178 622.5
Csa04g01412 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.6e-117 419.1
Csa04g00526 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 3.6e-114 408.7
Csa04g00526 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 4.6e-182 634.4
Csa04g01412 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 8.4e-160 560.5
Csa06g01146 . 37 542 Aldehyde Dehydrogenase Gene Family AT1G79440 76.9 5.6e-234 807.0
Csa07g00612 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.5 1.2e-235 812.8
Csa06g03100 . 197 665 Aldehyde Dehydrogenase Gene Family AT2G14170 63.4 7.1e-177 617.5
Csa01g00183 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 8.1e-251 862.8
Csa01g00183 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.0 1.4e-253 872.1
Csa02g00266 . 1 497 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 2.2e-264 907.9
Csa01g00788 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.3 4.5e-258 887.1
Csa06g01741 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.2 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01146 Csa_Chr06 FPKM 15.279076 15.901697 19.428278 18.482159 9.848925 11.052631 10.089614 25.879772 26.328197 27.620157
Csa06g01146 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0