Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01146 ATGATCATGACGGTCACTGCTAGAGTAATCACAACAGTTCGATCATTGGTTCCATCCAGTCAAGTCCCTCTTCTACGTCCATCTTCTTATGTCTTAGCTGCCCAGAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTACGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCCTTAAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGAAAAAGGGAGACCGATGATGCTATTTCATCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGATTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTTTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTTTTCCGAAGAAGCAAAGCGAGTATACGGTGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGCATCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCTGGTGTCGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACTTTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCCTGCATAATATTTGACGATGCGGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGAGACGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTACAGAAGGTTGAGAAATTTCTTCAAGATGCCACTACAAAGGGAGCGAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCAAATGACACCAATGCAGGATTAGCTGCTTACATATTCACTAATAATATTCAACGTTCGTGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGTGTTAAACAGTCAGGCCTTGGAAGGGAGGGGTCGAAATATGGGATGGACGAGTATCTTGAGTTGAAATATGTTTGCTTGGGGAATATGGACCGCCAATGA 1626 45.08 MIMTVTARVITTVRSLVPSSQVPLLRPSSYVLAAQKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTLKVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEELGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGIITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRQ* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9553079 9570338 - CsaV3_6G013440.1 Csa06g01146 532773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01146 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491
Csa06g01146 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Csa06g01146 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Csa06g01146 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Csa06g01146 541 SUPERFAMILY ALDH-like 61 539 IPR016161 GO:0016491
Csa06g01146 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Csa06g01146 541 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013|GO:0009450
Csa06g01146 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Csa06g01146 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
Csa06g01146 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00266 Csa-Chr2:1824868 Csa06g01146 Csa-Chr6:9553079 3.22E-58 dispersed
Csa02g00312 Csa-Chr2:2115327 Csa06g01146 Csa-Chr6:9553079 6.66E-103 dispersed
Csa06g01146 Csa-Chr6:9553079 Csa07g02347 Csa-Chr7:21717182 2.86E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01146 K17761 - csv:101217352 1031.94