Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01147 ATGAGTTCGAATACCGCGTCGAGCTCGAACGATGCATCATCTAATAGAAGGAATTCGAAACGACCTAAATATTCGAGGTTTACCCAGCAGGAGCTTCCAGCGTGTAAACCTATTCTCACACCAAGATGGGTGATTTCCGCATTCATGTTAGTTAGCATTATCTTTGTTCCCATTGGAGTTGCTTCCTTGTTTGCTTCCAGAGATGTCGTTGAAATAATCGATCGTTATGAAACTGAGTGTATACCAGAAAGGTTTAGAAGCGATAAGGTTGGATTCATACAGGGCACTGCAAATAAAATTTGCCGCAGAAACATCACTGTGCCGAAACGTATGAAGCAACCAATATATGTCTATTACCAGCTTGACAATTTCTATCAGAATCACCGCAGATACGTGCAGAGCCGTAGTGATAAGCAATTGAGAGATCCTGGCAGCGAGCGTGATACAAGCTCTTGCAAGCCTGAAGACAACTGGAATGGGCAGCCAGTTGTTCCATGTGGTTTGATAGCATGGAGTTTGTTTAATGATACCTACAACTTCACCCTTAACAAAAAGCAAGTCGCTATTAATAAGGTCGGTATCTCATGGAAGAGTGACCGGGAACACAAATTCGGCAAGAATGTATTTCCCAAGAACTTTCAGAAAGGCAATATTACAGGAGGCAAAAAACTTAATGAAAGTGTACCATTAAGTCAACAAGAGGACCTTATTGTGTGGATGCGAACGGCTGCTCTCCCCACATTCAGAAAGTTATATGGAAAGATAGAAGTCGACCTTGAGAAGAATGATGTAATTGATGTGGTTTTGGAGAACAATTACAACACTTACAGTTTTAATGGCAAGAAAAAGCTTGTGCTTTCTACAACTAGCTGGCTTGGTGGGAAGAACGACTTTCTTGGCATTGCTTATCTTACTGTTGGTGGGTTATGCTTCTTTTTGGCAATGGCTTTCACAGTCGTCTATCTTGTTAAGCCAAGGCGACTTGGGGACCCATCATATCTGTCATGGAATAGAAACCCAAGTGGGCACTGA 1032 42.15 MSSNTASSSNDASSNRRNSKRPKYSRFTQQELPACKPILTPRWVISAFMLVSIIFVPIGVASLFASRDVVEIIDRYETECIPERFRSDKVGFIQGTANKICRRNITVPKRMKQPIYVYYQLDNFYQNHRRYVQSRSDKQLRDPGSERDTSSCKPEDNWNGQPVVPCGLIAWSLFNDTYNFTLNKKQVAINKVGISWKSDREHKFGKNVFPKNFQKGNITGGKKLNESVPLSQQEDLIVWMRTAALPTFRKLYGKIEVDLEKNDVIDVVLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLAMAFTVVYLVKPRRLGDPSYLSWNRNPSGH* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9578918 9582262 + CsaV3_6G013450.1 Csa06g01147 532774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01147 343 MobiDBLite consensus disorder prediction 1 15 - -
Csa06g01147 343 MobiDBLite consensus disorder prediction 1 26 - -
Csa06g01147 343 MobiDBLite consensus disorder prediction 135 153 - -
Csa06g01147 343 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 63 327 IPR005045 GO:0016020
Csa06g01147 343 MobiDBLite consensus disorder prediction 135 156 - -
Csa06g01147 343 PANTHER CELL CYCLE CONTROL PROTEIN 50 3 342 IPR005045 GO:0016020
Csa06g01147 343 PIRSF Lem3/Cdc50 1 339 IPR005045 GO:0016020
Csa06g01147 343 PANTHER ALA-INTERACTING SUBUNIT 3 3 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01800 Csa-Chr3:13692584 Csa06g01147 Csa-Chr6:9578918 1.98E-178 dispersed
Csa06g01147 Csa-Chr6:9578918 Csa06g03808 Csa-Chr6:30227748 9.49E-139 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01147 - - csv:101216400 688.723