Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01148 ATGCAGCTCCTTCAATCCCGCTTGATAAAGTCTCTATCAATTTCTTCTTCACCGGCCGCCTCCACAATCCAAGAAATTGCTTCTGCTTGCCCCAAAGGTTTGGCTAAGGTTGTGCTGAAGAAGGGGAAGGCGCAGCTTTTCAAAGATGGGAGTCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGAAGGCCACCACCAAAAACTGGAGATGTTGTCCTGGTAGCTGATGGGACTGAAAAACCTATAGGATGGGGTCTGTATAATTCAGTTTCTATGTTCTCTGTTAGATTGATGCAGTTGGAAGAAGAGGCAGCTAGAGACCCTTCCTGCACATTAAATGTTGAGAAGATGATTGAAACGAGGGTACATACTGCTAGAGAATTACGAAAGAACTTGGGGCTTCCGTCAGCTAGTACTAATGCTTATCGTCTTGTTAATAGTGAAGGAGACAGATTGTCAGGACTGATTATCGATGTCTTTGGAGATTTAGCAGTGGTAGCATCATCTGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATAGAGGATTGTGTCCGTGGAATTGAAGAAATCAACCATGTGAAATGGAGACCATCGGTGGACATTCTGAAAGAAGAAGGTATAGATGTGTCTGAATTGAAGGATACAAGTCCGTCTACTTGTCCTGAAAGAACAAAGGTGATGGAGAATGACATTTTTTATGCCATCTCACTTGAAGGCCAGAAAACAGGTTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCGGAGGGTCAGAAAGTTCTTGATCTCTGCTGCTATAGTGGTGGGTTTTCTCTAAATGCATTACGTGGTGGAGCTATTAATGTCACTGGTATTGATTCGTCATTGCCTGCACTGGAGCTAGCAAAAGAAAATGTGGTCCTTAATAGCATGGATCCGGAAAGAATATCATTTCTGAAAGCGGATGCCACAGCATTCATGAAGGATGCCCTATCTAGGAATGAATCTTGGGATGTAGTCATTTTGGATCCTCCTAAACTAGCACCACGGAAAAAGGTTTTGCAAACTGCATCAGGTATGTACAGGAATTTAAATTCATTGGCAATGCAGCTCACAAGAAAAGGTGGTTTTCTCATGACTTGTTCGTGTTCTGGAGCAATGACACAAAGTGGGATGTTCTTGCAAATACTTCAGGGTGCAGCATCAACGGCTAAAAAGAAAATTACGGTTCTACGACAAGCAGGAGCAGCATGTGATCACCCAATCGACCCTACTTATCCAGAGGGTGCTTATCTTTCTAACATTCTTCTACGAGTGCTATGA 1320 42.73 MQLLQSRLIKSLSISSSPAASTIQEIASACPKGLAKVVLKKGKAQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFSVRLMQLEEEAARDPSCTLNVEKMIETRVHTARELRKNLGLPSASTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIEEINHVKWRPSVDILKEEGIDVSELKDTSPSTCPERTKVMENDIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNALRGGAINVTGIDSSLPALELAKENVVLNSMDPERISFLKADATAFMKDALSRNESWDVVILDPPKLAPRKKVLQTASGMYRNLNSLAMQLTRKGGFLMTCSCSGAMTQSGMFLQILQGAASTAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9582363 9586590 - CsaV3_6G013460.1 Csa06g01148 532775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01148 439 CDD AdoMet_MTases 265 380 - -
Csa06g01148 439 Gene3D RNA methyltransferase domain (HRMD) like 116 216 - -
Csa06g01148 439 ProSiteProfiles PUA domain profile. 34 90 - -
Csa06g01148 439 Pfam S-adenosylmethionine-dependent methyltransferase 224 393 IPR019614 GO:0008168
Csa06g01148 439 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 434 IPR029063 -
Csa06g01148 439 Gene3D PUA domain 34 105 IPR036974 GO:0003723
Csa06g01148 439 Pfam PUA-like domain 37 100 IPR041532 -
Csa06g01148 439 SMART pua_5 35 115 IPR002478 GO:0003723
Csa06g01148 439 CDD RlmI_M_like 120 213 - -
Csa06g01148 439 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 19 439 - -
Csa06g01148 439 Gene3D Vaccinia Virus protein VP39 226 439 IPR029063 -
Csa06g01148 439 SUPERFAMILY PUA domain-like 36 104 IPR015947 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01148 - - csv:101215914 828.165