Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01150 ATGGCAGATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTCTGTCACCGGAGGGCGTGGCAGCTGGGACAGATGGAACGGTGAGGAAGGTGCCCTCGTGGCGACTCAATATGGATGAATTTCGGTTGCCTACTACAAACAAGAGGTCTCAACATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTTAATGAAGTTGATTCCTACAATGAACTGGGTATCCTGCCTGGAACTTTAACTGAGGATGAAAAGAAGGAAGAAGCAAATAGTGAGAGACAGGCAATATATATATCAAACGTAGCAAACATGTTGATCTTCATTGCAAAAGTTTACGCTTCGGTTGAGAGCAGATCACTAGCAGTAATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCAGGGTTCATACTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTATCGTTATCCTATCGGCAAAAATAGAATGCAACCAGTGGGAATTGTGGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTCGAGAACTTATTTCAGAGGTTCAACCAGATAGAGATCCAGATAAAGTGAAATGGATGGTTGGAATAATGGCAGCTGTGACAGTAGTGAAATTTTTCCTTACAATATACTGTCGTAGATTCGCAAATGAAATCATCAGAGCCTATGCCCAAGATCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTAGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACGGTGATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGATTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATAGATACAGTGAGAGCATATACCTTTGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACGTCTCTAAGTCAAGCGCATGACATCGGGGAAACACTTCAAGACAAACTTGAACAGCTTGATGAGGTGGATCGAGCTTTTGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 1203 42.14 MADNPRTDSFRTELLSPEGVAAGTDGTVRKVPSWRLNMDEFRLPTTNKRSQHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGILPGTLTEDEKKEEANSERQAIYISNVANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISEVQPDRDPDKVKWMVGIMAAVTVVKFFLTIYCRRFANEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9591178 9594649 - CsaV3_6G013480.1 Csa06g01150 532777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01150 400 TIGRFAM CDF: cation diffusion facilitator family transporter 110 386 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa06g01150 400 Gene3D Cation efflux protein transmembrane domain 109 305 IPR027469 -
Csa06g01150 400 Gene3D Cation efflux protein, cytoplasmic domain 312 387 IPR036837 -
Csa06g01150 400 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 2 399 - -
Csa06g01150 400 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 310 386 IPR036837 -
Csa06g01150 400 Pfam Cation efflux family 114 305 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa06g01150 400 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g01150 400 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 2 399 - -
Csa06g01150 400 Pfam Dimerisation domain of Zinc Transporter 314 386 IPR027470 -
Csa06g01150 400 SUPERFAMILY Cation efflux protein transmembrane domain-like 107 307 IPR027469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03110 Csa-Chr1:27113429 Csa06g01150 Csa-Chr6:9591178 2.91E-117 dispersed
Csa05g00670 Csa-Chr5:4499982 Csa06g01150 Csa-Chr6:9591178 1.42E-152 dispersed
Csa06g01150 Csa-Chr6:9591178 Csa07g01805 Csa-Chr7:18322473 1.67E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01150 - - csv:101216157 795.423