Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01150 ATGGCAGATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTCTGTCACCGGAGGGCGTGGCAGCTGGGACAGATGGAACGGTGAGGAAGGTGCCCTCGTGGCGACTCAATATGGATGAATTTCGGTTGCCTACTACAAACAAGAGGTCTCAACATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTTAATGAAGTTGATTCCTACAATGAACTGGGTATCCTGCCTGGAACTTTAACTGAGGATGAAAAGAAGGAAGAAGCAAATAGTGAGAGACAGGCAATATATATATCAAACGTAGCAAACATGTTGATCTTCATTGCAAAAGTTTACGCTTCGGTTGAGAGCAGATCACTAGCAGTAATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCAGGGTTCATACTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTATCGTTATCCTATCGGCAAAAATAGAATGCAACCAGTGGGAATTGTGGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTCGAGAACTTATTTCAGAGGTTCAACCAGATAGAGATCCAGATAAAGTGAAATGGATGGTTGGAATAATGGCAGCTGTGACAGTAGTGAAATTTTTCCTTACAATATACTGTCGTAGATTCGCAAATGAAATCATCAGAGCCTATGCCCAAGATCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTAGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACGGTGATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGATTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATAGATACAGTGAGAGCATATACCTTTGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACGTCTCTAAGTCAAGCGCATGACATCGGGGAAACACTTCAAGACAAACTTGAACAGCTTGATGAGGTGGATCGAGCTTTTGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 1203 42.14 MADNPRTDSFRTELLSPEGVAAGTDGTVRKVPSWRLNMDEFRLPTTNKRSQHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGILPGTLTEDEKKEEANSERQAIYISNVANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISEVQPDRDPDKVKWMVGIMAAVTVVKFFLTIYCRRFANEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9591178 9594649 - CsaV3_6G013480.1 Csa06g01150 532777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01150 400 TIGRFAM CDF: cation diffusion facilitator family transporter 110 386 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa06g01150 400 Gene3D Cation efflux protein transmembrane domain 109 305 IPR027469 -
Csa06g01150 400 Gene3D Cation efflux protein, cytoplasmic domain 312 387 IPR036837 -
Csa06g01150 400 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 2 399 - -
Csa06g01150 400 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 310 386 IPR036837 -
Csa06g01150 400 Pfam Cation efflux family 114 305 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa06g01150 400 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g01150 400 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 2 399 - -
Csa06g01150 400 Pfam Dimerisation domain of Zinc Transporter 314 386 IPR027470 -
Csa06g01150 400 SUPERFAMILY Cation efflux protein transmembrane domain-like 107 307 IPR027469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01150 - - - csv:101216157 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03110 Csa-Chr1:27113429 Csa06g01150 Csa-Chr6:9591178 2.91E-117 dispersed
Csa05g00670 Csa-Chr5:4499982 Csa06g01150 Csa-Chr6:9591178 1.42E-152 dispersed
Csa06g01150 Csa-Chr6:9591178 Csa07g01805 Csa-Chr7:18322473 1.67E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01150 Csa_Chr06 FPKM 1.684012 1.329224 1.888799 2.068776 2.501385 2.768947 2.598542 2.558114 2.290197 3.134832
Csa06g01150 Csa_Chr00 FPKM 1.721367 1.399223 2.439604 2.461304 2.948448 3.175582 2.970487 3.073817 2.650146 3.569722