Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01151 ATGGCTTTCTCATCCTCCTTTGCTCGATCTACCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTTTCGCCGTCTGATTTCCGGAAGGCTTCATTCGTCGGGAACTCTTTAAAGCTTCAATCTGGTCTTTTTGGAACTACTGTCTCGAGTGGGGCGTCTTCTTTACAGTTGAGGTCATCTAATAATCGAACTGTCCAACCCATCAAAGCTACGGCCACTGAGGCGCCTCCAGCGATTCAAAAAACTCCGAGAAGTGGGAAGACCAAGATTGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTATTGCGAGTTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTAGTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCGATGATTCTACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCTGCAGATATCCCATGGGGTGATTATGGGGCTGAATACGTTGTTGAGTCCTCTGGAGTTTTCACTACAAAAGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGGCAATGGATATTGTTTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGCAACACAAAAGACTGTTGATGGCCCTTCAATGAAGGATTGGAGAGGGGGTCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCCGTTGGGAAGGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTTCCGACACCTAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGCGACTCAAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCATTCATGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTAAACTAA 1278 44.21 MAFSSSFARSTVSSSLIEASRSDFSPSDFRKASFVGNSLKLQSGLFGTTVSSGASSLQLRSSNNRTVQPIKATATEAPPAIQKTPRSGKTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMAYMFKYDSSHGVFNGTIKVLDDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPAMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFMKLVTWYDNEWGYSNRVLDLIEHMAMVSALN* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9595907 9601280 - CsaV3_6G013490.1 Csa06g01151 532778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01151 425 Gene3D Dihydrodipicolinate Reductase; domain 2 239 405 - -
Csa06g01151 425 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 413 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Csa06g01151 425 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
Csa06g01151 425 MobiDBLite consensus disorder prediction 57 71 - -
Csa06g01151 425 MobiDBLite consensus disorder prediction 57 89 - -
Csa06g01151 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620
Csa06g01151 425 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 9 423 - -
Csa06g01151 425 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 9 423 IPR020831 GO:0016620
Csa06g01151 425 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
Csa06g01151 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287
Csa06g01151 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Csa06g01151 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Csa06g01151 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Csa06g01151 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Csa06g01151 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Csa06g01151 425 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Csa06g01151 425 Gene3D - 91 418 - -
Csa06g01151 425 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01151 Csa07g01207 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02011 Csa-Chr3:15962880 Csa06g01151 Csa-Chr6:9595907 1.48E-106 transposed
Csa04g02722 Csa-Chr4:26248609 Csa06g01151 Csa-Chr6:9595907 5.92E-115 transposed
Csa06g00121 Csa-Chr6:809676 Csa06g01151 Csa-Chr6:9595907 0 transposed
Csa06g01151 Csa-Chr6:9595907 Csa07g01207 Csa-Chr7:11880570 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01151 K00134 - csv:101203472 823.157