Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01152 ATGGCGTCTGCAGCTTCTCGTGCAACTTTCCATCTCCTTCCCACCACATCCTCTTCCTCCTCTTCAACCCGCTCTGCCCTTCTTCAATTTTCCCCATCTACCACTTCCTCTTCCTCAATTCGCCTCCGTAGCGCCGCCACTCCTCGCCTTGGCTTTGCCGCTGCAGACCCACTTTTCTCCCTCCATGTAGCTTCCAAGATTCGGTCGTTTGGGGGGAAGGCTTCGAGGGGTGTGGTGTCCATGGCTAAGAAGAGCGTTGGGGATTTGTCTGCCGCTGACTTGAAGGGGAAGAAGGTGTTCGTGAGAGCTGATCTGAATGTGCCTTTGGATGATAATCAGAATATTACTGACGACACTAGGATCAGAGCTGCTATTCCTACAATCAAGCATTTGACGGAGAAGGGAGCTAAAGTTATTCTATCCAGTCATTTGGGACGACCAAAAGGTGTGACTCCAAAGTACAGCTTGGCTCCTCTTGTGCCTAGGCTTTCTGAACTCCTTAGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCGGAGGTCGAAAAGTTGGTTGCTTCCCTGCCCGACGGTGGAGTTCTTCTCCTTGAAAATGTGAGATTCTACAAGGAAGAAGAGAAAAACGAACCCGAGTTTGCAAAGAAGCTTGCTTCTCTAGCCGATCTTTTTGTGAATGATGCATTTGGGACTGCACATAGAGCTCACGCTTCAACCGAGGGAGTCACCAAGTTTTTAAAGCCATCCGTAGCTGGTTTCCTCTTGCAGAAGGAACTCGACTATCTAGTGGGGGCCGTGTCAAGCCCGAAGAGGCCATTTGCTGCTATTGTTGGTGGTTCAAAGGTTTCTTCAAAGATTGGAGTGATTGAGTCACTTCTAGAAAAATGTGACATCCTACTCCTCGGTGGTGGAATGATCTTTACATTTTACAAGGCACAGGGACTTTCCGTTGGTTCATCTTTGGTGGAAGAGGATAAGCTAGAACTAGCGACCTCCCTCCTTGAGAAGGCCAAGGCTAAAGGAGTATCCCTTTTATTACCAACCGATGTCATCATTGCAGACAAGTTTGCTCCTGATGCAAACAGCAAGATTGTCCCAGCATCTGCCATCCCTGATGGATGGATGGGGCTGGACATTGGACCAGATTCCGTAAAGACATTCAATGATGCTTTGGACACTACCCAAACTATCATCTGGAATGGACCAATGGGAGTGTTCGAATTCGACAAGTTTGCAGTGGGCACAGAGGCCATTGCTAAAAAACTCGCAGAACTCAGCGGAAAGGGGGTGACGACCATCATCGGAGGTGGAGACTCGGTTGCAGCCGTGGAGAAGGTGGGAGTTGCAAACGTCATGAGCCACATTTCAACCGGTGGGGGTGCTAGTTTGGAGTTGTTGGAAGGCAAAGAGCTACCGGGTGTCCTCGCTCTTGATGAGGCCGTACCTGTCGCCGTGTAG 1458 49.73 MASAASRATFHLLPTTSSSSSSTRSALLQFSPSTTSSSSIRLRSAATPRLGFAAADPLFSLHVASKIRSFGGKASRGVVSMAKKSVGDLSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLTEKGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLSIQVVKADDCIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNEPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLEKAKAKGVSLLLPTDVIIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9603415 9606774 - CsaV3_6G013500.1 Csa06g01152 532779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01152 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 - -
Csa06g01152 485 CDD Phosphoglycerate_kinase 92 479 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 Gene3D - 268 455 IPR015824 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 93 109 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 115 137 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 192 207 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 220 242 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 251 273 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 274 293 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 396 421 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 432 443 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 455 472 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 Hamap Phosphoglycerate kinase [pgk]. 88 479 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 ProSitePatterns Phosphoglycerate kinase signature. 98 108 IPR015911 GO:0004618|GO:0006096
Csa06g01152 485 Pfam Phosphoglycerate kinase 91 469 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 Gene3D - 154 480 IPR015824 GO:0004618|GO:0006096
Csa06g01152 485 Gene3D - 62 152 IPR015824 GO:0004618|GO:0006096
Csa06g01152 485 SUPERFAMILY Phosphoglycerate kinase 88 479 IPR036043 GO:0004618|GO:0006096
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03286 Csa-Chr3:29990514 Csa06g01152 Csa-Chr6:9603415 2.39E-56 transposed
Csa06g01152 Csa-Chr6:9603415 Csa07g01204 Csa-Chr7:11837744 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01152 K00927 - csv:101215670 904.049