Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01152 ATGGCGTCTGCAGCTTCTCGTGCAACTTTCCATCTCCTTCCCACCACATCCTCTTCCTCCTCTTCAACCCGCTCTGCCCTTCTTCAATTTTCCCCATCTACCACTTCCTCTTCCTCAATTCGCCTCCGTAGCGCCGCCACTCCTCGCCTTGGCTTTGCCGCTGCAGACCCACTTTTCTCCCTCCATGTAGCTTCCAAGATTCGGTCGTTTGGGGGGAAGGCTTCGAGGGGTGTGGTGTCCATGGCTAAGAAGAGCGTTGGGGATTTGTCTGCCGCTGACTTGAAGGGGAAGAAGGTGTTCGTGAGAGCTGATCTGAATGTGCCTTTGGATGATAATCAGAATATTACTGACGACACTAGGATCAGAGCTGCTATTCCTACAATCAAGCATTTGACGGAGAAGGGAGCTAAAGTTATTCTATCCAGTCATTTGGGACGACCAAAAGGTGTGACTCCAAAGTACAGCTTGGCTCCTCTTGTGCCTAGGCTTTCTGAACTCCTTAGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCGGAGGTCGAAAAGTTGGTTGCTTCCCTGCCCGACGGTGGAGTTCTTCTCCTTGAAAATGTGAGATTCTACAAGGAAGAAGAGAAAAACGAACCCGAGTTTGCAAAGAAGCTTGCTTCTCTAGCCGATCTTTTTGTGAATGATGCATTTGGGACTGCACATAGAGCTCACGCTTCAACCGAGGGAGTCACCAAGTTTTTAAAGCCATCCGTAGCTGGTTTCCTCTTGCAGAAGGAACTCGACTATCTAGTGGGGGCCGTGTCAAGCCCGAAGAGGCCATTTGCTGCTATTGTTGGTGGTTCAAAGGTTTCTTCAAAGATTGGAGTGATTGAGTCACTTCTAGAAAAATGTGACATCCTACTCCTCGGTGGTGGAATGATCTTTACATTTTACAAGGCACAGGGACTTTCCGTTGGTTCATCTTTGGTGGAAGAGGATAAGCTAGAACTAGCGACCTCCCTCCTTGAGAAGGCCAAGGCTAAAGGAGTATCCCTTTTATTACCAACCGATGTCATCATTGCAGACAAGTTTGCTCCTGATGCAAACAGCAAGATTGTCCCAGCATCTGCCATCCCTGATGGATGGATGGGGCTGGACATTGGACCAGATTCCGTAAAGACATTCAATGATGCTTTGGACACTACCCAAACTATCATCTGGAATGGACCAATGGGAGTGTTCGAATTCGACAAGTTTGCAGTGGGCACAGAGGCCATTGCTAAAAAACTCGCAGAACTCAGCGGAAAGGGGGTGACGACCATCATCGGAGGTGGAGACTCGGTTGCAGCCGTGGAGAAGGTGGGAGTTGCAAACGTCATGAGCCACATTTCAACCGGTGGGGGTGCTAGTTTGGAGTTGTTGGAAGGCAAAGAGCTACCGGGTGTCCTCGCTCTTGATGAGGCCGTACCTGTCGCCGTGTAG 1458 49.73 MASAASRATFHLLPTTSSSSSSTRSALLQFSPSTTSSSSIRLRSAATPRLGFAAADPLFSLHVASKIRSFGGKASRGVVSMAKKSVGDLSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLTEKGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLSIQVVKADDCIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNEPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLEKAKAKGVSLLLPTDVIIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9603415 9606774 - CsaV3_6G013500.1 Csa06g01152 532779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01152 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 - -
Csa06g01152 485 CDD Phosphoglycerate_kinase 92 479 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 Gene3D - 268 455 IPR015824 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 93 109 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 115 137 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 192 207 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 220 242 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 251 273 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 274 293 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 396 421 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 432 443 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PRINTS Phosphoglycerate kinase family signature 455 472 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 Hamap Phosphoglycerate kinase [pgk]. 88 479 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 ProSitePatterns Phosphoglycerate kinase signature. 98 108 IPR015911 GO:0004618|GO:0006096
Csa06g01152 485 Pfam Phosphoglycerate kinase 91 469 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 IPR001576 GO:0004618|GO:0006096
Csa06g01152 485 Gene3D - 154 480 IPR015824 GO:0004618|GO:0006096
Csa06g01152 485 Gene3D - 62 152 IPR015824 GO:0004618|GO:0006096
Csa06g01152 485 SUPERFAMILY Phosphoglycerate kinase 88 479 IPR036043 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01152 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - csv:101215670 904.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03286 Csa-Chr3:29990514 Csa06g01152 Csa-Chr6:9603415 2.39E-56 transposed
Csa06g01152 Csa-Chr6:9603415 Csa07g01204 Csa-Chr7:11837744 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1133 . . . . . . Bma08g00819 . . . . . . . . . Cpe16g00710 Bhi05g01997 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00916 . . Bma12g00579 . . . . . . . . Cpe05g01034 . . . . . . . . . . . . . . . Csa06g01152 . Cme01g01511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01152 Csa_Chr06 FPKM 0.232432 0.241526 0.0 0.185886 0.862336 0.77717 0.763986 0.613096 0.721177 0.629574
Csa06g01152 Csa_Chr00 FPKM 0.231931 0.0 0.297795 0.279595 0.95836 0.897527 1.232983 0.688805 0.850185 0.696996