Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01159 ATGGGGAAAGGAAGAGCTCCATGTTGTGATAAGAATCAAGTGAAGAGAGGGCCATGGAGCCCTGCTGAAGATTTAAGGCTCATCACTTTCATCCAAACCCATGGCCATGACAATTGGAGAGCTCTCCCTAAACAAGCAGGATTGTTAAGGTGTGGGAAAAGTTGCCGACTAAGATGGATCAATTACCTTCGACCAGATGTGAAACGAGGAAATTTTACTGAAGATGAAGAGGAAACCATAATCAAGTTGCATAAAACTTGGGGAAACAAGTGGTCTAAAATTGCATCTCGTTTGCCTGGAAGAACGGACAATGAGATCAAGAACGTTTGGAACACACATCTAAAGAAGAGATTATCACCGACAACAAAAGTTATTCTCGACGATTTTGGTGATGAACCAAAAGAGTCATCTTCGACAACTTCTTCCTCCTCTTTCTCCTCTTCCTCCAGTTTAGTCTCCTCCAATCAAACACAAAACATAGAGACAGAACAACTCAACAAGACCAACTCCATTAACAACAATAACAACCTCTTTTGTCTCAAACCAAAAGCAACCAGCTCTCTTTCTACTAACACTTCAAATTCAAATTCAAGTTGGCCTCAAAACCACTCTGATTTTGGAGAAGAAGTGGAGAAGAATAAAGAGAACCAACAATTGGAATTGGAATTGGAGTCAGAATCTCAATCAAACACTATGGAAATTGAAATCCCATTGGAATTTGACAAAGATTTTTGGAACATGTTAGATTTAGACATAGATTTGTTCGAATCTAACGAAGTAGATCAAAATTATTGTCAAGGTTCAAACTTTGGAGCACAAAAAAACCAAGATTTCGAAAATCACATGTGGTTTAAGTATTTGGAGAACGAGTTGGGGTTAAACCGGCCGCCTGAACCTGATGGTCGTGCCGGTGTCGACGACACGACCACAGAGGATCACAGGCTAGAGGATGATGTAGACCCTTGCATGGCTTATTTTGCAGATGGGTTCACTCAACAACTTTAG 1005 40.5 MGKGRAPCCDKNQVKRGPWSPAEDLRLITFIQTHGHDNWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTEDEEETIIKLHKTWGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLSPTTKVILDDFGDEPKESSSTTSSSSFSSSSSLVSSNQTQNIETEQLNKTNSINNNNNLFCLKPKATSSLSTNTSNSNSSWPQNHSDFGEEVEKNKENQQLELELESESQSNTMEIEIPLEFDKDFWNMLDLDIDLFESNEVDQNYCQGSNFGAQKNQDFENHMWFKYLENELGLNRPPEPDGRAGVDDTTTEDHRLEDDVDPCMAYFADGFTQQL* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9676821 9681165 - CsaV3_6G013570.1 Csa06g01159 532786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01159 334 MobiDBLite consensus disorder prediction 294 313 - -
Csa06g01159 334 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Csa06g01159 334 SMART sant 15 65 IPR001005 -
Csa06g01159 334 SMART sant 68 116 IPR001005 -
Csa06g01159 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Csa06g01159 334 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Csa06g01159 334 MobiDBLite consensus disorder prediction 188 215 - -
Csa06g01159 334 Gene3D - 16 68 - -
Csa06g01159 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 295 - -
Csa06g01159 334 CDD SANT 71 114 IPR001005 -
Csa06g01159 334 MobiDBLite consensus disorder prediction 135 159 - -
Csa06g01159 334 CDD SANT 18 63 IPR001005 -
Csa06g01159 334 Coils Coil 209 229 - -
Csa06g01159 334 MobiDBLite consensus disorder prediction 188 204 - -
Csa06g01159 334 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Csa06g01159 334 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Csa06g01159 334 Gene3D - 71 170 - -
Csa06g01159 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Csa06g01159 334 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Csa06g01159 334 MobiDBLite consensus disorder prediction 127 159 - -
Csa06g01159 334 PANTHER - 1 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01159 Csa-Chr6:9676821 Csa01g01172 Csa-Chr1:7263083 2.41E-62 dispersed
Csa06g01159 Csa-Chr6:9676821 Csa03g02229 Csa-Chr3:19581175 7.66E-64 transposed
Csa06g01159 Csa-Chr6:9676821 Csa02g01062 Csa-Chr2:10293412 1.59E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31986 PF00249 Myb_DNA-binding 4.10E-13 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01159 K09422 - csv:101202999 628.246