Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01160 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA 465 45.16 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL* 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9695970 9699438 - CsaV3_6G013580.1 Csa06g01160 532787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01160 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Csa06g01160 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Csa06g01160 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Csa06g01160 154 PANTHER - 1 152 - -
Csa06g01160 154 PANTHER UBIQUITIN 1 152 - -
Csa06g01160 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Csa06g01160 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Csa06g01160 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Csa06g01160 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Csa06g01160 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Csa06g01160 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Csa06g01160 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Csa06g01160 154 Gene3D - 78 153 - -
Csa06g01160 154 Gene3D - 1 77 - -
Csa06g01160 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Csa06g01160 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Csa06g01160 154 CDD Ubl_ubiquitin 1 76 - -
Csa06g01160 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Csa06g01160 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02314 Csa-Chr3:20673203 Csa06g01160 Csa-Chr6:9695970 1.21E-82 dispersed
Csa06g03539 Csa-Chr6:28796750 Csa06g01160 Csa-Chr6:9695970 7.35E-06 dispersed
Csa06g01160 Csa-Chr6:9695970 Csa01g01103 Csa-Chr1:6843101 4.53E-81 transposed
Csa06g01160 Csa-Chr6:9695970 Csa06g03538 Csa-Chr6:28792634 4.53E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01160 K12158 - csv:101214716 293.893