Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01163 ATGCCTATGGCTACCGCTCCCTTGAACAAAATTGAGCGAGCCCATCAGATGTACCGTGAAGGACTCTATGCCGAAGCTCTGAGATTCTACACTGAAGCCCTTTCCATGGCTAAGACCAAGTCCCAACGGATTGCTCTTCATAGTAACAGAGCTGCTTGCCATTTGAAACTTCATGATTTCAACAAGGCAGCAGAAGAATGTACATGGGTTCTTGAACTTGATCACAAGCATACTGGAGCCTTAATGCTTCGTGCTCAGACTCTTGTCACACTCAAGGAATATCATTCTGCTTTGTTTGATGTTAACAGACTTATTGAGTTGAATCCGTCATCAGAAGTTTATCAGAATCTTCACACTCGACTCAAGACGCAACTGTCACTTGCTCCAATACCTGAATCAGAAGCAGAGCTAGAAGAAGAGGAGGAAGAAGAAGAATACGTTGATGAGTTCAATGAATATGCAGCCAATGAGAAGTGCATCGAGGGAAAAGAATATGTTGTCACTCCGACTTTTGAACAAGTACAGAAACCCGAGCATAATTGCAATTTGATTGAAAAGAAGATTATCAAGACTCAGGGTAACTGTGGATTATCTGAAGTAGAAAGGGTCAATCAGAAAGTTGAGGTGAAATTGACGGCTAAAAGTGAAGTTGTTGCCCCTCAAGGACAGATTAAGAAGGGCACAACAACCCAAGGTCCCAATGGCTGGCAAACAATCCCAAAACCAAAAGGACACTCAGCGTTAGACTATGCACGTTGGGATAGAGTTGAGGATGATTCTAGTGAAGATGATGATGACGACGAAGAAGAAGACTCAGGACCTCAATTCCGTTTTCGTGTTAGAACCGTTGGTGTTAAACCTGTGAAATAA 870 42.76 MPMATAPLNKIERAHQMYREGLYAEALRFYTEALSMAKTKSQRIALHSNRAACHLKLHDFNKAAEECTWVLELDHKHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLHTRLKTQLSLAPIPESEAELEEEEEEEEYVDEFNEYAANEKCIEGKEYVVTPTFEQVQKPEHNCNLIEKKIIKTQGNCGLSEVERVNQKVEVKLTAKSEVVAPQGQIKKGTTTQGPNGWQTIPKPKGHSALDYARWDRVEDDSSEDDDDDEEEDSGPQFRFRVRTVGVKPVK* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9762144 9764899 + CsaV3_6G013610.1 Csa06g01163 532790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01163 289 SMART tpr_5 78 111 IPR019734 GO:0005515
Csa06g01163 289 SMART tpr_5 44 77 IPR019734 GO:0005515
Csa06g01163 289 SMART tpr_5 7 40 IPR019734 GO:0005515
Csa06g01163 289 MobiDBLite consensus disorder prediction 222 237 - -
Csa06g01163 289 Gene3D Tetratricopeptide repeat domain 3 129 IPR011990 GO:0005515
Csa06g01163 289 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 289 - -
Csa06g01163 289 SUPERFAMILY TPR-like 11 121 IPR011990 GO:0005515
Csa06g01163 289 MobiDBLite consensus disorder prediction 222 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01163 Csa-Chr6:9762144 Csa07g01568 Csa-Chr7:16107814 3.07E-11 dispersed
Csa06g01163 Csa-Chr6:9762144 Csa06g01370 Csa-Chr6:11645258 1.73E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01163 - - csv:101219918 542.732