Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01165 ATGCATATGGAGAATTTATCTTCTAGTGATCCATCACATTCGGCAATGTATGAAAATAGTGATTCGAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAGGAATTTTCACCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAATCATACTGTACATTTCTTCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCAATAATTTTTTGCCATAGGTTCTTTCTTCGGCAATCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTTGAAGAAACCCCTCGCCCGTTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCTTACAAACCCCTTGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGGTTACCACCTTCTGGTGAAGCTGAGGGAAGCATTGGAGGTGGTCCTACTAATCAAACCCCTACAAAAGCTCCCACCAACAGCGAAGAACGCGCCATAGTAGACAATCATGCACTTGGTGTAGGTATTGCTACCTCAAGGCTTGGAACCTCAAAAGCTGGTTCATCTAGGCCAGCATCTGAACACTCATTTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAATGTAGATTTTAGAAGTCCTTCCAATCATAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACACTCAAAACTCACTAAAGCATCAGTCAGAGGGATTGGCTGAGCAAGACCACGGAAATGATATGAAAATGAATGAAGCAGCGTCAAGGGATGCAATGGAATTGAAAGACAAACATGTAATTCGAAATATGGATTTTAGAGAAGTTACACTCGGCAAATCTCAGGACGTTATCAAAAAGATCGACAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAAGCAAAGTTGGAATAAGTCATCAAATAAACAAGAATATGATGATTTGTATCGAGAGGACGATAAAGAGGAGCATCCTCAACGAACACGGCAGTCGTCATATAATCTAGACTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTCAGTTATGGGTATCAAGATTCCCCCAAGTCAAACAGCCGTAAGAGAGGCAGGGAGCTCACAGGATAA 1716 42.07 MHMENLSSSDPSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEAEGSIGGGPTNQTPTKAPTNSEERAIVDNHALGVGIATSRLGTSKAGSSRPASEHSFAGDQPSRAMQNHSIESSNVDFRSPSNHKTGSESKVRQEMEPSAFHDKGNTQNSLKHQSEGLAEQDHGNDMKMNEAASRDAMELKDKHVIRNMDFREVTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQKQSWNKSSNKQEYDDLYREDDKEEHPQRTRQSSYNLDSSNIEEGEFANANEVSYGYQDSPKSNSRKRGRELTG* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9773091 9783770 + CsaV3_6G013630.1 Csa06g01165 532792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01165 571 MobiDBLite consensus disorder prediction 529 559 - -
Csa06g01165 571 SUPERFAMILY Cyclin-like 32 177 IPR036915 -
Csa06g01165 571 Pfam Cyclin, N-terminal domain 36 176 IPR006671 -
Csa06g01165 571 Gene3D - 26 175 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 274 300 - -
Csa06g01165 571 SMART cyclin_7 182 267 IPR013763 -
Csa06g01165 571 SMART cyclin_7 67 169 IPR013763 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 320 362 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 509 528 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 487 571 - -
Csa06g01165 571 CDD CYCLIN 176 237 IPR013763 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 363 379 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 319 404 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 1 31 - -
Csa06g01165 571 PIRSF Cyclin_L 477 570 - -
Csa06g01165 571 PIRSF Cyclin_L 33 479 - -
Csa06g01165 571 SUPERFAMILY Cyclin-like 178 274 IPR036915 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g01165 571 Gene3D - 177 277 - -
Csa06g01165 571 PANTHER - 3 517 - -
Csa06g01165 571 CDD CYCLIN 61 132 IPR013763 -
Csa06g01165 571 MobiDBLite consensus disorder prediction 380 394 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 487 503 - -
Csa06g01165 571 MobiDBLite consensus disorder prediction 284 300 - -
Csa06g01165 571 PANTHER CYCLIN 3 517 IPR043198 GO:0006357|GO:0016538
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01165 K15188 CCNT; cyclin T - csv:101220862 1129.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02779 Csa-Chr1:24520738 Csa06g01165 Csa-Chr6:9773091 2.76E-39 dispersed
Csa01g03553 Csa-Chr1:32689848 Csa06g01165 Csa-Chr6:9773091 0 dispersed
Csa02g01653 Csa-Chr2:15678918 Csa06g01165 Csa-Chr6:9773091 9.74E-22 dispersed
Csa02g02077 Csa-Chr2:18958082 Csa06g01165 Csa-Chr6:9773091 1.03E-119 dispersed
Csa06g01165 Csa-Chr6:9773091 Csa06g02439 Csa-Chr6:21769184 2.40E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01165 Csa_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0