Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01166 ATGTCGCAAAGCAGTGGGCCTGATTTCAATCTACCGGATGAGATTTTGGCGGTGATTCCAACGGATCCATATGATCAGCTCGATCTTGCGCGTAAAATCACCTCCATGGCGATTGCCTCTCGTGTGTCGAATCTTGAAGCTGAAATGATAAGGATGAAGCAAAAGCTTAAAGAGAAGGAAAAAACTATTTATGACCTGCAGGAGAAGATGTCCCACCTCGAGCACGCGAACCAGGAAGCTGAATCTAGGTTGAAGATTGCGCTTGATGATAATACGAGGCTTTCCAGGGAAAGAGATTCTCTATCAATGACTTCAAAGAAACTTGGACGTGATTTGGCAAAGCTGGAGACATTTAAGAGACAACTTATGCAATCATTAAGTGATGAATCCTCTCAAACTGAAACTGTTGATATTGGAACCTGTGATCAAGCAGTTCCTAAAGCATATACTGACAAGGATGAGGTAACTAATGGGCACGCCACACATTCATTCGGTGGTTCCACAGAGACGAGAAGCACAATAGTTGAAGGAAAGCATATTGGACAAAGATTTTCATCGCCGTATATCACCCCGAGGCTCACTCCATCAGCGACTCCAAAAATTATTTCAACCAGTGTATCCCCCAGAGGGTATTCCACTGTTGCTTCTCCACAGATAATGTCTGGTTCAACTTCTCCAACAAAACACTCATACGATGGACGCATTGCATTATCTCCATGGTACCCATCAAGCCAGCAGTCTTCAGCAGCAAGTTCTCCTCCTCGTTCTCGTCAACTGTCTGGTCGCCCTGCACGGGTGGATGGCAAGGAGTTTTTTCGCCTAGCCAGGAGTCGTCTGTCACTAGAGCAGTTTAGTGCCTTCCTTTCGAACATAAAGGAACTCAATGCTCATAAGCAGACTAGAGAGGAAACTTTAAGAAAAGCAGAAGAGATATTTGGGACAGATAACAAAGATCTTTTTCTGTCATTTCAAGGATTGCTTAACCGCAATGTTCATTAG 999 44.14 MSQSSGPDFNLPDEILAVIPTDPYDQLDLARKITSMAIASRVSNLEAEMIRMKQKLKEKEKTIYDLQEKMSHLEHANQEAESRLKIALDDNTRLSRERDSLSMTSKKLGRDLAKLETFKRQLMQSLSDESSQTETVDIGTCDQAVPKAYTDKDEVTNGHATHSFGGSTETRSTIVEGKHIGQRFSSPYITPRLTPSATPKIISTSVSPRGYSTVASPQIMSGSTSPTKHSYDGRIALSPWYPSSQQSSAASSPPRSRQLSGRPARVDGKEFFRLARSRLSLEQFSAFLSNIKELNAHKQTREETLRKAEEIFGTDNKDLFLSFQGLLNRNVH* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9784109 9789386 + CsaV3_6G013640.1 Csa06g01166 532793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01166 332 Coils Coil 42 97 - -
Csa06g01166 332 PANTHER - 3 331 - -
Csa06g01166 332 MobiDBLite consensus disorder prediction 186 264 - -
Csa06g01166 332 Coils Coil 291 311 - -
Csa06g01166 332 MobiDBLite consensus disorder prediction 187 231 - -
Csa06g01166 332 PANTHER - 3 331 - -
Csa06g01166 332 MobiDBLite consensus disorder prediction 239 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01166 - - - csv:101220153 638.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01399 Csa-Chr3:10466785 Csa06g01166 Csa-Chr6:9784109 6.86E-68 dispersed
Csa06g01166 Csa-Chr6:9784109 Csa06g00556 Csa-Chr6:4769005 1.84E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010490 1 2 0 1 1 1 0 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 3 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01166 Csa_Chr06 FPKM 0.0 0.0 0.0 0.0 1.79746 1.518645 1.343182 0.425695 0.594521 0.717406