Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01167 ATGGCTTCATTTCCTCATAATTTCTACCCTGACCTTCCTTATCCTAACAATTTTTCTGACCTTCAAACCCTATTAATGGCTGCTGGAGACACTGGAATGTGTGGCATTCGAAACAACCACAACAATGACAACATCGACTTATTCGTTTCGAGGGAAGAAACTTTTGTCTCTTCCTTTGATCAAACCGTGTCACCCGATCAATCATCGTCTGATACCAGCCTATCGCCCTTCCTAACAATGCAGCATCCTGACCTATACGGTCCAGTCTCCGATATGACCGTTCCGTCGTTGCCCGAGTTTAACATGAGTACGTATGACATTCATAGCTTAATCAACTGTCAACCACAAGTGCCTGGTACATGTAACTACGGCGACCAACTCATAGGCTTCGTGCCCGAATTGAAGCCCCTTTACCGCGACACATGGGGAAATCAGAGTAGGTATGAGATACATGCAGTGGAAGAGACAAATATTAAGGTGGCGAGTCGCTACTCAGAAGAAGAAAGGAAAGAGAGAATTGTCAGATATTTAAAAAAGAGAAACCAGAGGAATTTCAACAAAACCATCAAGTATGCATGTAGGAAAACCCTAGCAGACAGAAGAACAAGAGTACGAGGAAGATTTGCTCGGAATAATAATGAACTGTGTGACAATGATCATGAAATCCCTCTCAAAACCAACCAATTTTCTACCCCTAATCACAACCTAATCAAACAAATAGATCAAACGAACAAGGAAGAAGAAGAGAGCTGGCTGCAAGAATTGGCAACAAGTTTAATGATGGGGTTTCTAAATTCTCTCTCTTTTCAATCTAGTGCTTCTTCACATATAAAAGTCAAGTTATATTTGATTGCTTTTGTGAAGATCATGTGCCTGTAA 879 41.18 MASFPHNFYPDLPYPNNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVSSFDQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVPGTCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNHNLIKQIDQTNKEEEESWLQELATSLMMGFLNSLSFQSSASSHIKVKLYLIAFVKIMCL* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9796099 9798161 + CsaV3_6G013650.1 Csa06g01167 532794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01167 292 ProSiteProfiles CCT domain profile. 169 211 IPR010402 GO:0005515
Csa06g01167 292 Pfam CCT motif 169 211 IPR010402 GO:0005515
Csa06g01167 292 PANTHER ACTIVATOR OF SPOMIN::LUC2 1 261 - -
Csa06g01167 292 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01167 - - - csv:101221095 520.776
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g01167 Csa07g01186 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00261 Csa-Chr5:1587303 Csa06g01167 Csa-Chr6:9796099 9.40E-23 dispersed
Csa06g01167 Csa-Chr6:9796099 Csa01g02115 Csa-Chr1:18437986 1.73E-09 dispersed
Csa01g02373 Csa-Chr1:20913251 Csa06g01167 Csa-Chr6:9796099 6.07E-20 transposed
Csa06g01706 Csa-Chr6:15008251 Csa06g01167 Csa-Chr6:9796099 5.70E-21 transposed
Csa06g01167 Csa-Chr6:9796099 Csa07g01186 Csa-Chr7:11652744 6.86E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1043 . . . . . . . . . . . . . . Sed01g3865 Cpe04g00857 . Bhi05g02024 Tan02g0062 Cmetu01g2034 Lac12g0892 Hepe02g0028 . . Cla02g01815 Cam02g1920 Cec02g1941 Cco02g1985 Clacu02g1902 Cmu02g1849 Cre02g2164 . . . . . Csa07g01186 . Cme11g01597 . . . . . . . . Sed01g0752 . . . . . . . . Bhi10g00962 Tan05g0607 Cmetu11g1980 . Hepe08g0631 . . . . . . . . . . Csa06g01167 Chy11g01026 Cme01g01531
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012112 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31987 PF06203 CCT 2.10E-16 CL0281 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01167 Csa_Chr06 FPKM 0.011038 0.020836 0.022578 0.012671 0.039538 0.0 0.045291 0.180477 0.156237 0.135013
Csa06g01167 Csa_Chr00 FPKM 0.0 0.009645 0.044467 0.011761 0.071218 0.02239 0.061907 0.173455 0.148781 0.230925