Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01169 ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCCCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG 522 49.23 MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9817253 9820028 - CsaV3_6G013670.1 Csa06g01169 532796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01169 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 3 168 - -
Csa06g01169 173 Coils Coil 94 114 - -
Csa06g01169 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Csa06g01169 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Csa06g01169 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 168 - -
Csa06g01169 173 MobiDBLite consensus disorder prediction 126 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01169 - - - csv:101220394 333.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g01169 Csa07g01185 CCT
Csa01g01304 Csa06g01169 CCT
Csa01g01304 Csa06g01169 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00625 Csa-Chr5:4131728 Csa06g01169 Csa-Chr6:9817253 6.46E-50 dispersed
Csa05g00849 Csa-Chr5:6402429 Csa06g01169 Csa-Chr6:9817253 3.23E-59 dispersed
Csa05g00883 Csa-Chr5:6752730 Csa06g01169 Csa-Chr6:9817253 4.08E-51 dispersed
Csa06g00193 Csa-Chr6:1330357 Csa06g01169 Csa-Chr6:9817253 1.28E-46 dispersed
Csa06g00218 Csa-Chr6:1497292 Csa06g01169 Csa-Chr6:9817253 9.23E-53 dispersed
Csa06g01169 Csa-Chr6:9817253 Csa06g01395 Csa-Chr6:11927402 1.60E-52 dispersed
Csa01g03551 Csa-Chr1:32657337 Csa06g01169 Csa-Chr6:9817253 4.76E-81 transposed
Csa02g01835 Csa-Chr2:17560164 Csa06g01169 Csa-Chr6:9817253 1.43E-22 transposed
Csa02g02640 Csa-Chr2:22982621 Csa06g01169 Csa-Chr6:9817253 2.81E-22 transposed
Csa06g01169 Csa-Chr6:9817253 Csa07g01185 Csa-Chr7:11638640 1.57E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g316 . . . . . Bpe08g01337 Bma14g00470 . . . . . . . . . Cpe20g00754 . . . . . . . . . . . . . . . . . Cone11ag1283 Lsi02g01442 Csa06g01169 Chy11g01314 . . . . . . . . . Sed05g2881 . Cmo20g00502 . Cma20g00467 . Car20g00407 . . Bhi10g00583 Tan05g0284 Cmetu11g0670 . Hepe08g0862 . . Cla03g00230 Cam03g0244 Cec03g0239 Cco03g0247 Clacu03g0243 Cmu03g0858 Cre03g0550 . Csa01g01304 Chy12g00863 Cme12g00335
Vvi19g1042 . . . . . . . . . . . . . . Sed05g1854 Cpe04g00856 . Bhi05g02025 Tan02g0063 Cmetu01g1532 Lac12g0891 Hepe02g0029 . . Cla02g01814 Cam02g1919 Cec02g1940 Cco02g1984 Clacu02g1901 Cmu02g1848 Cre02g2163 . . . . . Csa07g01185 . . Blo15g00606 . . . . . . . Sed01g0750 . . . . . . . . Bhi10g00963 Tan05g0608 Cmetu11g1961 . Hepe08g0630 . . . . . . . . . . Csa06g01169 Chy11g01024 Cme01g01534
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00714 . 1 219 AS2 family AT1G65620 67.0 9.7e-70 260.0
Csa02g01532 . 2 110 AS2 family AT1G65620 81.7 6.1e-48 187.6
Csa01g00123 CCT,ECH 3 144 AS2 family AT1G65620 60.0 8.3e-45 177.2
Csa03g03970 CCT,ECH 3 113 AS2 family AT1G65620 70.3 2.0e-43 172.6
Csa05g01896 CCT,ECH 1 115 AS2 family AT1G65620 70.4 5.9e-43 171.0
Csa01g00875 CCT,ECH 1 116 AS2 family AT1G65620 69.0 4.7e-40 161.4
Csa02g01532 . 1 122 AS2 family AT5G66870 86.9 1.8e-57 219.9
Csa02g00714 . 4 138 AS2 family AT5G66870 68.4 1.7e-44 176.8
Csa01g00123 CCT,ECH 1 113 AS2 family AT5G66870 68.1 2.1e-39 159.8
Csa03g03970 CCT,ECH 7 113 AS2 family AT5G66870 68.2 2.8e-39 159.5
Csa05g01896 CCT,ECH 1 121 AS2 family AT5G66870 62.8 3.7e-39 159.1
Csa01g00875 CCT,ECH 12 128 AS2 family AT5G66870 66.1 1.8e-38 156.8
Csa02g01532 . 4 118 AS2 family AT2G23660 69.6 3.8e-44 175.6
Csa02g00714 . 6 112 AS2 family AT2G23660 69.2 7.3e-40 161.4
Csa01g00123 CCT,ECH 8 113 AS2 family AT2G23660 64.2 1.8e-38 156.8
Csa03g03970 CCT,ECH 7 123 AS2 family AT2G23660 58.1 2.0e-37 153.3
Csa01g00875 CCT,ECH 12 143 AS2 family AT2G23660 57.6 1.3e-36 150.6
Csa05g01896 CCT,ECH 4 114 AS2 family AT3G27650 87.4 2.7e-54 208.4
Csa03g03970 CCT,ECH 4 114 AS2 family AT3G27650 84.7 1.9e-52 202.2
Csa01g00123 CCT,ECH 4 114 AS2 family AT3G27650 78.4 1.9e-47 185.7
Csa01g00875 CCT,ECH 7 117 AS2 family AT3G27650 73.9 4.3e-44 174.5
Csa02g00714 . 3 112 AS2 family AT3G27650 68.2 6.9e-42 167.2
Csa02g01532 . 4 112 AS2 family AT3G27650 67.9 3.8e-40 161.4
Csa01g00123 CCT,ECH 3 167 AS2 family AT5G63090 70.1 6.1e-58 220.7
Csa03g03970 CCT,ECH 2 125 AS2 family AT5G63090 78.2 5.0e-52 201.1
Csa05g01896 CCT,ECH 1 113 AS2 family AT5G63090 85.1 2.1e-50 195.7
Csa01g00875 CCT,ECH 7 116 AS2 family AT5G63090 82.7 6.1e-50 194.1
Csa02g00714 . 3 112 AS2 family AT5G63090 74.5 2.0e-45 179.1
Csa02g01532 . 2 110 AS2 family AT5G63090 70.6 1.5e-40 162.9
Csa01g03551 . 14 125 AS2 family AT5G63090 64.3 4.1e-38 154.8
Csa05g00849 . 4 106 AS2 family AT5G63090 69.9 1.2e-37 153.3
Csa06g01169 CCT,ECH 14 117 AS2 family AT5G63090 67.3 1.2e-37 153.3
Csa05g00849 . 3 114 AS2 family AT2G30130 92.0 2.5e-54 208.8
Csa06g01395 . 2 138 AS2 family AT2G30130 68.6 1.6e-48 189.5
Csa01g03551 . 10 129 AS2 family AT2G30130 68.3 6.2e-45 177.6
Csa06g01169 CCT,ECH 10 125 AS2 family AT2G30130 72.4 6.2e-45 177.6
Csa07g01185 CCT 17 128 AS2 family AT2G30130 70.5 1.7e-42 169.5
Csa01g00123 CCT,ECH 8 129 AS2 family AT2G30130 61.5 1.1e-38 156.8
Csa05g00883 . 39 150 AS2 family AT2G30130 67.0 9.5e-38 153.7
Csa05g01777 . 14 126 AS2 family AT2G30130 63.7 2.1e-37 152.5
Csa02g00714 . 7 109 AS2 family AT2G30130 67.0 8.1e-37 150.6
Csa03g03970 CCT,ECH 8 111 AS2 family AT2G30130 65.4 1.1e-36 150.2
Csa01g03551 . 4 170 AS2 family AT1G31320 74.6 9.6e-66 246.5
Csa06g01169 CCT,ECH 1 171 AS2 family AT1G31320 72.6 5.5e-61 230.7
Csa07g01185 CCT 19 132 AS2 family AT1G31320 75.4 1.3e-46 183.0
Csa05g00849 . 2 132 AS2 family AT1G31320 66.2 2.1e-44 175.6
Csa06g01395 . 6 123 AS2 family AT1G31320 63.6 3.4e-39 158.3
Csa05g00883 . 48 160 AS2 family AT1G31320 63.7 6.5e-38 154.1
Csa01g01304 CCT,ECH 17 129 AS2 family AT1G31320 62.8 1.9e-37 152.5
Csa01g00123 CCT,ECH 9 120 AS2 family AT1G31320 62.5 7.2e-37 150.6
Csa01g01304 CCT,ECH 20 136 AS2 family AT2G28500 70.1 2.8e-44 175.6
Csa01g01305 . 36 209 AS2 family AT2G28500 52.7 6.3e-44 174.5
Csa05g00625 . 48 140 AS2 family AT2G28500 88.2 1.5e-42 169.9
Csa05g01777 . 11 129 AS2 family AT2G28500 68.1 7.6e-42 167.5
Csa06g01663 . 33 201 AS2 family AT2G28500 51.9 7.6e-42 167.5
Csa06g01395 . 6 134 AS2 family AT2G28500 54.3 5.7e-37 151.4
Csa05g00849 . 5 113 AS2 family AT2G28500 66.1 7.4e-37 151.0
Csa06g01169 CCT,ECH 13 120 AS2 family AT2G28500 67.6 7.4e-37 151.0
Csa05g00625 . 48 203 AS2 family AT1G07900 68.9 1.8e-44 176.0
Csa06g01663 . 33 200 AS2 family AT1G07900 63.7 3.9e-44 174.9
Csa01g01304 CCT,ECH 20 136 AS2 family AT1G07900 66.7 9.1e-41 163.7
Csa01g01305 . 31 154 AS2 family AT1G07900 65.3 1.2e-40 163.3
Csa05g01777 . 11 129 AS2 family AT1G07900 62.2 2.5e-38 155.6
Csa06g01169 CCT,ECH 6 171 AS2 family AT1G16530 57.1 1.9e-47 185.7
Csa01g03551 . 4 119 AS2 family AT1G16530 66.7 1.6e-41 166.0
Csa07g01185 CCT 21 127 AS2 family AT1G16530 67.6 2.8e-38 155.2
Csa05g00849 . 5 110 AS2 family AT1G16530 68.2 2.4e-37 152.1
Csa05g00883 . 1 160 AS2 family AT2G30340 68.3 8.8e-58 220.7
Csa06g00218 . 60 170 AS2 family AT2G30340 79.3 6.8e-50 194.5
Csa05g00883 . 32 157 AS2 family AT2G40470 86.5 5.9e-59 224.2
Csa06g00218 . 60 169 AS2 family AT2G40470 86.4 7.0e-52 200.7
Csa06g01169 CCT,ECH 11 121 AS2 family AT2G40470 65.8 3.6e-40 161.8
Csa07g01185 CCT 23 127 AS2 family AT2G40470 67.6 3.4e-38 155.2
Csa01g03551 . 15 125 AS2 family AT2G40470 63.1 1.3e-37 153.3
Csa06g00193 . 1 119 AS2 family AT3G11090 78.2 7.3e-47 183.7
Csa03g02257 . 1 95 AS2 family AT2G42440 84.2 5.6e-43 171.4
Csa07g01611 . 6 117 AS2 family AT2G42440 70.5 2.3e-41 166.0
Csa03g02259 . 81 188 AS2 family AT2G42440 69.4 8.3e-39 157.5
Csa06g00613 . 29 138 AS2 family AT2G42440 65.2 2.7e-37 152.5
Csa07g01611 . 1 125 AS2 family AT3G58190 74.8 7.9e-49 190.7
Csa03g02257 . 4 95 AS2 family AT3G58190 90.2 4.1e-45 178.3
Csa03g02259 . 81 192 AS2 family AT3G58190 68.8 2.1e-41 166.0
Csa06g00613 . 29 127 AS2 family AT3G58190 74.7 5.2e-40 161.4
Csa03g00963 CCT 18 135 AS2 family AT3G58190 61.9 9.1e-37 150.6
Csa03g03758 . 30 124 AS2 family AT3G58190 71.6 9.1e-37 150.6
Csa03g02257 . 1 172 AS2 family AT2G31310 54.3 8.4e-39 157.1
Csa03g02259 . 81 295 AS2 family AT2G42430 55.8 2.4e-54 209.1
Csa06g00613 . 16 131 AS2 family AT2G42430 69.0 6.8e-41 164.5
Csa03g02257 . 3 94 AS2 family AT2G42430 80.4 8.4e-39 157.5
Csa03g00963 CCT 16 126 AS2 family AT2G42430 65.8 2.4e-38 156.0
Csa03g03758 . 29 170 AS2 family AT2G42430 54.9 9.2e-38 154.1
Csa07g01611 . 1 113 AS2 family AT2G42430 65.0 3.5e-37 152.1
Csa06g00613 . 29 221 AS2 family AT4G00220 64.1 6.8e-59 224.2
Csa03g00963 CCT 24 190 AS2 family AT4G00220 54.2 2.0e-42 169.5
Csa06g00614 CCT 29 212 AS2 family AT4G00220 52.3 3.9e-38 155.2
Csa06g00613 . 29 241 AS2 family AT2G45420 69.2 6.1e-72 267.7
Csa03g00963 CCT 24 197 AS2 family AT2G45420 53.8 9.5e-49 190.7
Csa03g02259 . 82 184 AS2 family AT2G45420 77.7 1.7e-42 169.9
Csa03g03758 . 30 136 AS2 family AT2G45420 72.9 2.1e-40 162.9
Csa07g01611 . 11 117 AS2 family AT2G45420 69.2 4.7e-40 161.8
Csa03g02257 . 7 95 AS2 family AT2G45420 76.4 1.4e-36 150.2
Csa03g03758 . 30 143 AS2 family AT3G03760 83.3 3.8e-48 188.7
Csa06g00613 . 29 130 AS2 family AT3G03760 80.4 2.2e-40 162.9
Csa03g02259 . 81 195 AS2 family AT3G03760 67.8 6.0e-38 154.8
Csa06g00613 . 29 139 AS2 family AT4G00210 73.0 1.3e-43 173.3
Csa03g00963 CCT 16 127 AS2 family AT4G00210 64.3 2.3e-40 162.5
Csa07g01611 . 1 115 AS2 family AT4G00210 61.7 8.3e-38 154.1
Csa03g02259 . 82 184 AS2 family AT4G00210 66.0 1.2e-36 150.2
Csa06g00613 . 29 224 AS2 family AT2G45410 51.0 1.4e-46 183.0
Csa03g00963 CCT 11 143 AS2 family AT2G45410 60.4 4.8e-42 167.9
Csa03g02259 . 82 184 AS2 family AT2G45410 68.0 1.9e-38 156.0
Csa05g00729 . 7 156 AS2 family AT5G06080 57.3 3.7e-44 174.9
Csa07g02387 . 29 137 AS2 family AT3G13850 76.1 2.1e-43 172.9
Csa03g02065 . 63 224 AS2 family AT1G68510 65.3 6.9e-59 224.2
Csa01g00381 . 79 240 AS2 family AT1G68510 62.4 1.0e-54 210.3
Csa05g02614 . 1 136 AS2 family AT1G68510 65.5 3.8e-49 191.8
Csa06g03011 . 1 104 AS2 family AT1G68510 63.5 1.6e-39 159.8
Csa03g02065 . 63 360 AS2 family AT1G67100 51.0 6.0e-71 264.2
Csa01g00381 . 79 218 AS2 family AT1G67100 72.5 7.4e-61 230.7
Csa05g02614 . 1 132 AS2 family AT1G67100 67.1 5.3e-51 198.0
Csa06g03011 . 1 110 AS2 family AT1G67100 66.4 3.7e-44 175.3
Csa04g02468 . 1 110 AS2 family AT1G67100 60.9 3.0e-38 155.6
Csa03g02065 . 63 360 AS2 family AT3G02550 57.3 4.7e-80 294.7
Csa01g00381 . 79 245 AS2 family AT3G02550 68.2 1.4e-63 240.0
Csa05g02614 . 1 141 AS2 family AT3G02550 64.1 6.2e-48 188.0
Csa06g03011 . 1 136 AS2 family AT3G02550 54.4 1.4e-39 160.2
Csa06g03011 . 1 234 AS2 family AT5G67420 57.9 4.2e-70 261.5
Csa04g02468 . 1 127 AS2 family AT5G67420 64.4 1.1e-46 183.7
Csa03g02065 . 65 184 AS2 family AT5G67420 65.0 8.0e-45 177.6
Csa01g00381 . 81 190 AS2 family AT5G67420 61.8 2.0e-40 162.9
Csa05g02614 . 3 106 AS2 family AT5G67420 63.5 1.1e-38 157.1
Csa06g03011 . 1 234 AS2 family AT3G49940 60.1 2.9e-71 265.4
Csa03g02065 . 65 219 AS2 family AT3G49940 53.5 4.6e-45 178.3
Csa01g00381 . 81 190 AS2 family AT3G49940 62.7 1.5e-40 163.3
Csa05g02614 . 3 106 AS2 family AT3G49940 64.4 1.2e-37 153.7
Csa06g03011 . 1 234 AS2 family AT4G37540 57.3 6.4e-68 254.2
Csa03g02065 . 65 175 AS2 family AT4G37540 66.7 3.6e-42 168.7
Csa01g00381 . 81 191 AS2 family AT4G37540 63.1 4.3e-40 161.8
Csa05g02614 . 3 126 AS2 family AT4G37540 55.6 4.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31988 PF03195 LOB 1.10E-43 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01169 Csa_Chr06 FPKM 0.729408 0.0 1.263184 1.852203 3.035839 3.446915 3.193495 3.004259 2.930249 2.752424