Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01170 ATGGCCTACTTGGACCATGCAGGTGCAACTTTGTATTCCGAGTTACAAATGGAGGCGATCTTCAAAGATCTCACTGCTAATGTATATGGGAATCCTCATAGCCAAAGTGATTCGAGCTTTGCCACTTCTGAAATTGTAAGGAGTGCCCGTCAACAGGTCCTTGACTATCTCAAAGCATCTCCGAAAGACTACAAATGCATATTTACTTCTGGTGCAACAGCAGCACTAAAATTAGTTGGTGAAGCTTTCCCATGGAGTCACCAGAGCAGCTTTGTGTACACAATGGAGAATCACAACAGTGTTCTTGGAATCAGGGAATATGCTCTTGAACAAGGCGCTCAAGCCTATGCTGTAGATATTGAAGAAGCAGAACATGATGCATTCACAGGAAATGTTGCATCAGTGCAAGCAACAAAGCACCAAATACTAACGAGAAATGAAGCCAAGTTTCTTGATAAAGATCATACAGGCAGTGCGTATAACTTGTTTGCCTTCCCTTCAGAGTGCAATTTCTCTGGTTCGAAATTTTGCCTTGAATTGGTGAAGATTGTTAAAGAAGATTTGATTAGATACTCTGATGGCTCACCATCTCTTAAGGGACGCTGGAAGGTTTTGATCGATGCTGCAAAAGGATGTGCCACAGAACCCCCAGATTTATCCAAGTATCCTGCTGATTTTGTTGTTATCTCTTTCTATAAGCTGTTTGGGTATCCAACTGGACTTGGAGCTCTCATAGTGCATACTGATGCTGCCAAGCTATTGAAGAGAACATACTTCAGTGGAGGCACTGTTGCTGCTTCAATTGCTGATATTAACTATGTTAAACGAAGAGAGGGCATCGAGGAGCTCTTTGAAGATGGTACAATCCCATTCCTGAGCATAGCCTCTCTATGCCATGGGTTCAAAGTTTTAAATTCTCTAACTATACCTGCAATATCTCGGCATACTTCATCACTTGCCACGTACTTGAGGAACATCCTTGTGGCCCTGAGGCATCCAAATGGAACGAGCATATGCACTATCTATGGAAGTCGCTCTTCCAAGACACTATGTAACGAAATGGGTCCTGTAGTCTCATTCAACTTGAAACAACCAGATGGATCTTGGGTTGGACATCGAGAAGTGGAAAAATTGGCCTCTTTGTCTGGGATTCAGTTAAGGACAGGATGTTTTTGCAATCCTGGTGCATGTGCAAAATATCTTGGTCTAACTCATTCGGATCTTGCTACAAATATTGAGGCAGGTCATGTCTGCTGGGATGATTGTGATATAATTAATGGAAAACCAACTGGTGCTGTGAGAGTATCCTTGGGATACATGTCAACTTATGAAGATATCAAGAAATTCATCGATTTTGTGGCAACTTTCTTTGTCTCAACACAAACTTACGCTAAGGATGTTCGATCACAATTTTGTGGAAGGTCAATCCATTGCGCAGACACAGGTTTTGAGAACAGATATTCAGCTTCTCAATTGGACCTGAAGTCTATTACTGTCTATCCAATCAAATCATGTGCAGGGTTCAGCATGGATAGATGGCCGTTAAGCAGTCGAGGGCTTCTTCATGATCGTGAGTGGCTACTTCAAAGCCTGACGGGTGAAACTCTTACACAGAAGAAGGTTCCTGAAATGTCACTTGTACGTACTTATATTGACCTCAGTCAGGGGATATTGTTTATTGAATCCCCACGTTGCAAAGAGAGACTGCAGATCACCCTGAATTCAAGTCCTTGCAATGACAAGAGAGAACAAATAAGTTTGCATGGTCAGATATATCAAGTTCAGGGTTACGACAAGGAAGTTGATACTTGGTTTAGTGCAGCTATTGGTCGACCATGTACTTTGTTGCGCCATATGAGTTCCAATCATTGTGTTAGCTCGTGTGAGAGAGATGGTGTAGGTACCTGTAGAGAATCACGAAATCTCTTGAATTTTCCCAATGAAGCCCAATTCTTGCTGATATCTGAGGAGAGTGTATCAGACCTCAATAGCAGATTGAATTCAAATGCTCAAAAGGATGTTCGTAAAACATTACTTCAAATTAATCCTATGAGGTTCCGGCCAAATCTTGTCATATCTGGAGGCAGACCTTATGCTGAAGATGAGTGGAGAAATATTAAAATTGGCAACAAATGCTTCAGATCGTTAGGTGGATGCAACCGTTGCCAGATGATCAATTTTGTTATTGATGCTGAACAAATTCAGAAGACAAACGAACCTTTAGCTACTTTAGCATCATACCGTAGGGTGAAGGGGAAAATCATGTTTGGGGTACTGCTGAGATATGAATGTGCCGCTGAAGAAGGGAAGACTGGTGACGTATGGCTTCAGGTTGGAGAAAGTATAATCCCAGATTGCGAGTAG 2364 42.01 MAYLDHAGATLYSELQMEAIFKDLTANVYGNPHSQSDSSFATSEIVRSARQQVLDYLKASPKDYKCIFTSGATAALKLVGEAFPWSHQSSFVYTMENHNSVLGIREYALEQGAQAYAVDIEEAEHDAFTGNVASVQATKHQILTRNEAKFLDKDHTGSAYNLFAFPSECNFSGSKFCLELVKIVKEDLIRYSDGSPSLKGRWKVLIDAAKGCATEPPDLSKYPADFVVISFYKLFGYPTGLGALIVHTDAAKLLKRTYFSGGTVAASIADINYVKRREGIEELFEDGTIPFLSIASLCHGFKVLNSLTIPAISRHTSSLATYLRNILVALRHPNGTSICTIYGSRSSKTLCNEMGPVVSFNLKQPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLTHSDLATNIEAGHVCWDDCDIINGKPTGAVRVSLGYMSTYEDIKKFIDFVATFFVSTQTYAKDVRSQFCGRSIHCADTGFENRYSASQLDLKSITVYPIKSCAGFSMDRWPLSSRGLLHDREWLLQSLTGETLTQKKVPEMSLVRTYIDLSQGILFIESPRCKERLQITLNSSPCNDKREQISLHGQIYQVQGYDKEVDTWFSAAIGRPCTLLRHMSSNHCVSSCERDGVGTCRESRNLLNFPNEAQFLLISEESVSDLNSRLNSNAQKDVRKTLLQINPMRFRPNLVISGGRPYAEDEWRNIKIGNKCFRSLGGCNRCQMINFVIDAEQIQKTNEPLATLASYRRVKGKIMFGVLLRYECAAEEGKTGDVWLQVGESIIPDCE* 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9843637 9878665 + CsaV3_6G013680.1 Csa06g01170 532797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01170 787 Gene3D - 17 302 IPR015421 GO:0003824
Csa06g01170 787 PANTHER MOLYBDENUM COFACTOR SULFURASE 2 761 - -
Csa06g01170 787 SUPERFAMILY PLP-dependent transferases 1 455 IPR015424 -
Csa06g01170 787 SUPERFAMILY MOSC N-terminal domain-like 494 620 - -
Csa06g01170 787 Pfam MOSC N-terminal beta barrel domain 493 612 IPR005303 -
Csa06g01170 787 Gene3D Aspartate Aminotransferase, domain 1 303 455 IPR015422 GO:0003824
Csa06g01170 787 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 2 761 - -
Csa06g01170 787 Pfam MOSC domain 644 782 IPR005302 GO:0003824|GO:0030151|GO:0030170
Csa06g01170 787 Pfam Aminotransferase class-V 3 121 IPR000192 -
Csa06g01170 787 Pfam Aminotransferase class-V 203 449 IPR000192 -
Csa06g01170 787 ProSiteProfiles MOSC domain profile. 626 785 IPR005302 GO:0003824|GO:0030151|GO:0030170
Csa06g01170 787 SUPERFAMILY PK beta-barrel domain-like 495 745 IPR011037 -
Csa06g01170 787 Hamap Molybdenum cofactor sulfurase [MOCOS]. 1 784 IPR028886 GO:0006777|GO:0008265
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01170 K15631 ABA3; molybdenum cofactor sulfurtransferase [EC:2.8.1.9] - csv:101220625 1583.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00561 Csa-Chr5:3673981 Csa06g01170 Csa-Chr6:9843637 8.63E-25 dispersed
Csa06g01170 Csa-Chr6:9843637 Csa06g03918 Csa-Chr6:30968302 7.60E-25 dispersed
Csa06g01170 Csa-Chr6:9843637 Csa02g01508 Csa-Chr2:14374980 2.05E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1040 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01813 Cam02g1918 Cec02g1939 Cco02g1983 Clacu02g1900 Cmu02g1847 Cre02g2162 . . . . . . . . Blo15g00605 . . . . . . Bma12g00598 Sed14g1679 . . . . . . . . Bhi10g00965 Tan05g0609 Cmetu11g0122 . . . . . . . . . . . . Csa06g01170 Chy11g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005491 1 7 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01170 Csa_Chr06 FPKM 11.548992 14.499179 8.554878 7.781679 17.390661 11.951177 17.74004 7.967151 7.691623 7.94102