Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01176 ATGAGGGAGTGCTATCGGTTTGCCTTGCTAGTGGTGTTTGCATGGTTCGTGAAAGGGTTGAATGCTAGTGCAGGAGATATTGACCCACACTACAGAACTTGTGTTAAACACTGTGAAGAAATAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCGGATGGTGTTTCTGTTGGTCAGCCTTGGTATATGCAAGAACCACTTTACTTAAGGTGGAAACAATGGGACTGCCAGAGTGATTGCCGTTACCATTGCATGGTCAAACGAGAGGGTGAAAGAGAAGCACTTGGTTATGATCCTGTTAAATATCATGGTAAATGGCCTTTCAAGCGTATTTATGGGATCCAGGAACCTGTTTCTGTTGCATTCTCTGCCCTCAACCTTTCAATGCATTTTCATGGCTGGCTGTCCTTTTTTATCCTTCTATATTACAAATTACCTTTGAGACAAGACAAGAAGGCATACTATGAATTTGCCAGTTTGTGGCACATTTATGCACTCTTTTCAATGAACTCTTGGTTTTGGAGTGCTGTTTTCCATAGTCGTGACGTGGATTTGACCGAGAAATTAGATTACTCATCTGCTGTGGCAGTGCTTGGGTTTTCACTCATTCTGGCGATTCTAAGAAGTTTTAATGTGAGACATGAGGCTACCAGAGTCATGGTTGCAGCTCCTTTGCTTGCTTTTGCCCTTACACATATCTTATACATCAACTTCTACGAACTGGATTATGGGTGGAACATGATTGTTTGTGTTACCATGGGGGTTTCTCAACTTCTAATATGGGCAATCTGGGCTGGTGTAACTCATCATCCTTCTCGCTGGAAACTGTGGACAGTGGTTGTGGGAGGTGGCTTAGCCCTACTACTGGAAATCTATGATTTTCCACCATATAAAGGCTTTGTAGATGCTCATGCTCTCTGGCATGCCACTACCATCCCTCTCACCTATATTTGGTGGAGTTTTATCAGAGATGATGCTGAGTTTCAAACCTCTAATCTTCTCAAGAAATCCAAATAG 1029 42.57 MRECYRFALLVVFAWFVKGLNASAGDIDPHYRTCVKHCEEIGCIDQQCFPQCKFSSDGVSVGQPWYMQEPLYLRWKQWDCQSDCRYHCMVKREGEREALGYDPVKYHGKWPFKRIYGIQEPVSVAFSALNLSMHFHGWLSFFILLYYKLPLRQDKKAYYEFASLWHIYALFSMNSWFWSAVFHSRDVDLTEKLDYSSAVAVLGFSLILAILRSFNVRHEATRVMVAAPLLAFALTHILYINFYELDYGWNMIVCVTMGVSQLLIWAIWAGVTHHPSRWKLWTVVVGGGLALLLEIYDFPPYKGFVDAHALWHATTIPLTYIWWSFIRDDAEFQTSNLLKKSK* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9934994 9939521 + CsaV3_6G013740.1 Csa06g01176 532803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01176 342 PANTHER PER1-RELATED 6 342 IPR007217 GO:0006506
Csa06g01176 342 Pfam Per1-like family 70 330 IPR007217 GO:0006506
Csa06g01176 342 PANTHER POST-GPI ATTACHMENT TO PROTEINS FACTOR 3 6 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01176 K23553 PGAP3, PER1; post-GPI attachment to proteins factor 3 - csv:101218465 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01675 Csa-Chr3:12544910 Csa06g01176 Csa-Chr6:9934994 5.29E-178 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1016 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01584 . . . . . . . . Sed01g0744 . . . . . . . . Bhi10g00975 Tan05g0615 Cmetu11g2544 . Hepe08g0625 . . . . . . . . . . Csa06g01176 Chy11g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001566 2 2 2 2 2 2 3 2 2 1 1 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 6 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01176 Csa_Chr06 FPKM 7.19414 7.999597 32.689869 34.251896 49.228039 45.148151 49.350216 65.375801 68.66497 70.544983