Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01178 ATGGACTCAAGAGACAATAAAGTACCACCTCAAGGTGAGATTATTCAGATTCTAGGTGATTTTTTGGAAGTGGCCATTACATCAATTGTTTTCCTCAAAGGCATTTACCCTTCTGGTGCTTTTGAAAGAAGGAGGTACATGAATGCGGTTGTGCAGAAAGCTCGACATCCTGAGCTGCAGGATTACATCCACTCAACTGTTTCAGGGCTACTACCTTTCATCCAAAAGGGACTGGTGGAGAGAGTGGCGGTTATATTTTCCAACAGTGATAGCAACGTCCAGCTGGAGAGATTTGTTTTCAAGCTCACAGTGAACCAGTCTTATGAATCAAAGGTTGAAAATTCCGACCTGGAGTTTGCCTTACGAGCATTCTTGATCAAGCTGTCTGTCTCAGAACCTTTAACCAAGGTTCTTCCTCCTGATTGCAAATGGGAAATAACTGCCTACTTCCAAACACTCCCAAGTTCCAGTACAAGTAAGGATGCAGAATCATGGATCCCAACAGATACCAAACAATGGCAACAACCACCAGTAATCACCCCCATCAAGTCCATGACCAGCCGACCTCTGAGTTTGCAGTTGTATCTAGAACACCCTAGCTTATCTGAGCCAAATCATTATGAATAA 627 43.38 MDSRDNKVPPQGEIIQILGDFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQKARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFSNSDSNVQLERFVFKLTVNQSYESKVENSDLEFALRAFLIKLSVSEPLTKVLPPDCKWEITAYFQTLPSSSTSKDAESWIPTDTKQWQQPPVITPIKSMTSRPLSLQLYLEHPSLSEPNHYE* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9945760 9948942 + CsaV3_6G013760.1 Csa06g01178 532805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01178 208 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 1 201 IPR045091 -
Csa06g01178 208 ProSiteProfiles HORMA domain profile. 12 196 IPR003511 -
Csa06g01178 208 Gene3D HORMA domain 10 200 IPR036570 -
Csa06g01178 208 Pfam HORMA domain 18 115 IPR003511 -
Csa06g01178 208 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B 1 201 - -
Csa06g01178 208 SUPERFAMILY The spindle assembly checkpoint protein mad2 12 195 IPR036570 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01178 K13728 MAD2L2; mitotic spindle assembly checkpoint protein MAD2B - csv:101209787 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02236 Csa-Chr5:25088384 Csa06g01178 Csa-Chr6:9945760 4.96E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1010 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01809 Cam02g1912 Cec02g1932 Cco02g1976 Clacu02g1894 Cmu02g1839 Cre02g2156 . . . . . . . Cme11g01581 Blo15g00603 . . . . . . . Sed05g3285 . . . . . . . . Bhi10g00977 Tan05g0619 Cmetu11g1548 . . . . . . . . . . . . Csa06g01178 Chy11g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009127 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01178 Csa_Chr06 FPKM 86.882545 92.513016 58.999649 55.633305 77.229477 62.384548 66.359032 34.620235 36.61129 35.367542
Csa06g01178 Csa_Chr00 FPKM 120.535271 137.438339 31.851807 46.273914 46.849121 57.358536 52.522026 31.066233 29.423662 27.374384