Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01179 ATGGGTATGGGATACGGATCGCCATTAACGGCCTTCAATGCTAACTCTACAGCCGTGGAGACCGCAGCTCTCTTTCCTCCATACAATTCTACTTTACCAATGGATTCCTTTCCTAAGGCCACTGCGGTGCTTCCCACTTCCACAGGTGTTGTTATGAAATCCGATAGCGGTATAACCTACAATCTTCCCATTCCGGCCAGAAAGCGACCGAGAGATCATCATCATCATCATTCTTCTACTTCTACACTAAACCGATTCGTTTCCTATCCTTCATCGCAACTTCATAATAATTCACAGAAGAATTGCGGATGTAATTTGTATTTTCTGGGTGAAGATATCTCAATTCAGATTCAACAACAACAGATGGATCTAGATCTATTGATTTCACAACATATGGAGAAGGTGAGAATGGAAGTGGAGGAGAAACGGAAGAGAGAAGCGAGGAGAATAATGGAGGTAATAGAGGTGGGGATGATGAGGGTATTGAGGAGTAAAGAGGAAGAGATAGAGAAGATGGGGAAATTAAATTGGGAATTGGAGGAGAGAGTGAATTGTTTGAGTATGGAGAATCAAATATGGAGAGATGTGGCAGAGACGAATGAAGCGACGGCAAATGCGTTAAGGAGGAATTTGGAGGAAGTGCTGCTTTTACAGGAGACGAAGACAACGGTGGTGGTGGTGGAGGAGGAGGTGGCAGAGTCGTGTTGTGAGGGGGGTGGTGGTGGGGCAGAGGAAGAAGATGATGAGAGGAGGATGAGGAAGAAGAAGAGGAAGCAGGAAGAAGAAAATGAAGAAGAAGAGGAAGCAGAAGAAGAAGAGAGAAGGTGTAAGAAATGTGGGAAGGAAGAATCGTGTGTGTTATTATTGCCATGCAGACATTTGTGTTTGTGTACTGTTTGTGCTTCTTCTTTACATAATTGTCCTATTTGTAACTCTACTAACAATGCTAGTGTTCGGGTAATCCTCCCTTGA 972 43.83 MGMGYGSPLTAFNANSTAVETAALFPPYNSTLPMDSFPKATAVLPTSTGVVMKSDSGITYNLPIPARKRPRDHHHHHSSTSTLNRFVSYPSSQLHNNSQKNCGCNLYFLGEDISIQIQQQQMDLDLLISQHMEKVRMEVEEKRKREARRIMEVIEVGMMRVLRSKEEEIEKMGKLNWELEERVNCLSMENQIWRDVAETNEATANALRRNLEEVLLLQETKTTVVVVEEEVAESCCEGGGGGAEEEDDERRMRKKKRKQEEENEEEEEAEEEERRCKKCGKEESCVLLLPCRHLCLCTVCASSLHNCPICNSTNNASVRVILP* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9958663 9960142 - CsaV3_6G013770.1 Csa06g01179 532806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01179 323 MobiDBLite consensus disorder prediction 235 267 - -
Csa06g01179 323 Pfam Zinc finger, C3HC4 type (RING finger) 273 313 - -
Csa06g01179 323 MobiDBLite consensus disorder prediction 244 262 - -
Csa06g01179 323 Coils Coil 162 182 - -
Csa06g01179 323 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 35 322 IPR017066 -
Csa06g01179 323 Coils Coil 245 282 - -
Csa06g01179 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 322 IPR013083 -
Csa06g01179 323 ProSiteProfiles Zinc finger RING-type profile. 276 311 IPR001841 -
Csa06g01179 323 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 35 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01179 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - csv:101213369 365.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g01179 Csa07g01181 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03537 Csa-Chr1:32407571 Csa06g01179 Csa-Chr6:9958663 5.06E-46 dispersed
Csa06g01179 Csa-Chr6:9958663 Csa07g00104 Csa-Chr7:936419 3.73E-25 dispersed
Csa06g01179 Csa-Chr6:9958663 Csa07g01181 Csa-Chr7:11583959 2.10E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1009 . . . . . . . . . . . . . . Sed05g1856 Cpe04g00854 . Bhi05g02031 Tan02g0066 Cmetu01g2586 Lac12g0881 Hepe02g0032 . . Cla02g01808 Cam02g1911 Cec02g1931 Cco02g1975 Clacu02g1893 Cmu02g1838 Cre02g2155 . . . . . Csa07g01181 . Cme11g01580 Blo15g00602 . . . . . . Bma12g00622 Sed01g0743 . . . . . . . . Bhi10g00978 Tan05g0620 Cmetu11g1616 . Hepe08g0623 . . . . . . . . . . Csa06g01179 Chy11g01014 Cme01g01539
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001336 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01179 Csa_Chr06 FPKM 28.34866 38.735497 2.301071 3.151653 15.730069 9.340786 15.123145 55.202713 56.591808 65.673958
Csa06g01179 Csa_Chr00 FPKM 38.086525 52.19857 2.686591 3.478887 17.732458 11.497162 17.572132 65.470329 65.271194 77.764732