Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01182 ATGGCAGCTTCATCCATGGCTCTCTCCTCCCCTTCCTTCGCCGGCCAAGCCGTCAAATTATCCCCCACCGCCTCCGACCTCCTCGGCGAAGGCCGCATTACCATGAGAAAAACCGCCGGAAAGCCCAAGCCCGTTTCCTCCGGTAGCCCATGGTACGGCCCCGATCGTGTCAAATACCTTGGCCCATTCTCTGGAGAACCCCCATCCTATCTTACCGGAGAATTCCCCGGTGACTACGGTTGGGACACTGCCGGCCTCTCCGCCGACCCCGAAACCTTCGCCAAAAACCGTGAACTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGAGCCTTAGGCTGCGTATTCCCGGAGCTCCTCTCCCGCAACGGAGTCAAATTCGGCGAGGCTGTGTGGTTCAAAGCTGGATCACAAATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCAAGCTTGGTGCACGCACAGAGCATTCTAGCGATTTGGGCTTGTCAAGTAGTGCTCATGGGCGCAGTGGAAGGGTACAGAATTGCTGGGGGTCCGTTGGGTGAAATCACTGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTGGCTGATGATCCAGAGGCATTCGCGGAATTGAAAGTGAAGGAGCTTAAGAATGGTAGATTGGCTATGTTCTCGATGTTCGGATTTTTCGTACAAGCAATTGTAACTGGGAAAGGGCCATTGGAGAATTTGGCTGATCACTTGGCTGACCCTGTTAACAACAATGCTTGGGCCTATGCTACTAACTTTGTACCTGGAAAGTGA 804 54.35 MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9988814 9990198 + CsaV3_6G013800.1 Csa06g01182 532809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01182 267 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 267 - -
Csa06g01182 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Csa06g01182 267 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Csa06g01182 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 267 IPR001344 GO:0009765|GO:0016020
Csa06g01182 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03116 Csa-Chr5:31132138 Csa06g01182 Csa-Chr6:9988814 5.87E-67 dispersed
Csa06g01182 Csa-Chr6:9988814 Csa06g03767 Csa-Chr6:29986415 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01182 K08912 - csv:101213845 546.199