Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01183 ATGGCGTCTGGGAGTTCATTGAATGATCATTTATCCAAGAAGACTTCATTTTGGGGATTGTCATTATGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAATTTTGATTCTTGGTTTGTTATCTATGTGGATCCTGTTTAGAAAAAAATCTAAAAGATCTATGGACAAATTCCCTAATTTTATAAAAGATATCAGGATAGATCAGGTTGGGATTCAAACTCCCAATGACCACCCTGAACATAGACTTCTTTCAGTTGATGTCAAAAGAAATGATGAAAATTCAGAAGTAAGGGCTGTAACAAAATCAAGTGAACCTGATAACAATAGCCAATGCAGCTCCACTTACCAACATGAAAAAGCTGGCAATTCACAATCTGGGGAAGAAGGAAGCTCTGGAAATGCTCGTAAGCAGGCTTCAAGGTCGTATGGAGGATTTGGAGGAGTTGTGCCACCGTCTCCTCTTGTTGGCTTGCCAGAAATTTCACATCTTGGGTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCCACTGAAAATATTCTTGGAGAGGGAGGATATGGGGTTGTGTATAAGGGCAGACTCATTAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAAGCTATTGGCCACGTTCGGCATAAGAATCTTGTCCGACTGCTGGGCTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAGTGGCTACATGGAGCCATGTGCCAACACGGCACACTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACTGCTAAAGCGCTTGCGTATTTACATGAAGCAATCGAGCCAAAAGTTGTTCACAGAGACATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCGGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCGCCAGAATATGCAAATACAGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTCGGTGTTCTCTTGCTAGAAGCAATTACAGGGAGGGATCCTGTGGATTATGCACGTCCTTCTAATGAGGTTAATCTGGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTAGAGATCAAGCCAACTACTCGTGCTTTAAAACGTGCCCTTCTTGTTGCTCTTAGGTGTATTGATCCTGAATCAATCAAGAGACCCAAAATGAGTCATGTTGTAAGAATGCTTGAAGCCGATGAATTTCCACTCCACGAGGATAGGAGGAGCCGAAAAAGCCGATCAATAAGCTTGGAGATTGAGTCAATGAAAGAAATATCAGGTTCAGACCAGACGGGTGGGCCGTCCGAGAGCCATAAATCAGAGACAAGCCATGAATAG 1509 42.41 MASGSSLNDHLSKKTSFWGLSLWVLICICIGAFIILILGLLSMWILFRKKSKRSMDKFPNFIKDIRIDQVGIQTPNDHPEHRLLSVDVKRNDENSEVRAVTKSSEPDNNSQCSSTYQHEKAGNSQSGEEGSSGNARKQASRSYGGFGGVVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEIKPTTRALKRALLVALRCIDPESIKRPKMSHVVRMLEADEFPLHEDRRSRKSRSISLEIESMKEISGSDQTGGPSESHKSETSHE* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9996093 10002353 + CsaV3_6G013810.1 Csa06g01183 532810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01183 502 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Csa06g01183 502 MobiDBLite consensus disorder prediction 461 475 - -
Csa06g01183 502 MobiDBLite consensus disorder prediction 101 139 - -
Csa06g01183 502 MobiDBLite consensus disorder prediction 476 494 - -
Csa06g01183 502 Pfam Protein kinase domain 183 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01183 502 Coils Coil 202 222 - -
Csa06g01183 502 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Csa06g01183 502 SUPERFAMILY Protein kinase-like (PK-like) 166 459 IPR011009 -
Csa06g01183 502 PANTHER OS01G0323000 PROTEIN 3 496 - -
Csa06g01183 502 MobiDBLite consensus disorder prediction 93 144 - -
Csa06g01183 502 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Csa06g01183 502 CDD STKc_IRAK 188 454 - -
Csa06g01183 502 PANTHER OS10G0497600 PROTEIN 3 496 - -
Csa06g01183 502 ProSiteProfiles Protein kinase domain profile. 182 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01183 502 MobiDBLite consensus disorder prediction 461 502 - -
Csa06g01183 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Csa06g01183 502 SMART serkin_6 182 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01935 Csa-Chr2:18160240 Csa06g01183 Csa-Chr6:9996093 0 dispersed
Csa05g01588 Csa-Chr5:18747036 Csa06g01183 Csa-Chr6:9996093 1.01E-57 dispersed
Csa06g00019 Csa-Chr6:132740 Csa06g01183 Csa-Chr6:9996093 0 dispersed
Csa06g01183 Csa-Chr6:9996093 Csa06g02950 Csa-Chr6:25534935 8.83E-177 dispersed
Csa02g00523 Csa-Chr2:3681965 Csa06g01183 Csa-Chr6:9996093 6.33E-89 transposed
Csa06g00506 Csa-Chr6:4282021 Csa06g01183 Csa-Chr6:9996093 1.76E-71 transposed
Csa06g01183 Csa-Chr6:9996093 Csa07g01177 Csa-Chr7:11510722 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78346 PF00069 Pkinase 2.60E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01183 - - csv:101214087 941.414