Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01193 | ATGGGGAAAGACGTTGAAGTTGCTGAGCAAGGTGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCCCCTCTTATCGATCCCGAAGAGCTCACCAAATGGTCCCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTTTACGTCACCGTTTTGACCGTTATTGGTTACTCCCACGGAAGGGCCACTGACGCTGATCCCTGTAGCGGCGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGTGGTATGATCTTCATTCTTGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCTGCTGTCACTTTCGGCCTTTTCTTGGCTCGTAAAGTCTCTCTGGTTCGTGCTCTGTTATACATCATTGCTCAATGTGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAAGGCCTTCCAATCTGCTTATTATGTTAGATATAATGGTGGTGCTAACATGCTTAGCGATGGTTACAACAAAGGAACTGGGTTAGGTGCTGAAATTATTGGGACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCACGTTCCTGTTTTGGCTCCTCTCCCAATTGGGTTTGCCGTGTTTATGGTTCATTTGGCTACAATCCCCATTACCGGAACTGGAATTAACCCTGCTAGAAGTTTCGGAGCTGCTGTCATTTTCAACAAAGAGAAAGCCTGGGATGATCAATGGATCTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGCGCCATTAAAGCTCTGGGATCTTTCAGGAGCAACGCTTGA | 852 | 48.47 | MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHGRATDADPCSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLSDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA* | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10078532 | 10080455 | - | CsaV3_6G013910.1 | Csa06g01193 | 532820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01193 | 283 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Csa06g01193 | 283 | CDD | MIP | 39 | 267 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | Pfam | Major intrinsic protein | 31 | 264 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | ProSitePatterns | MIP family signature. | 103 | 111 | IPR022357 | - | |
Csa06g01193 | 283 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | PRINTS | Major intrinsic protein family signature | 85 | 109 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | PRINTS | Major intrinsic protein family signature | 122 | 141 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | PRINTS | Major intrinsic protein family signature | 171 | 189 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | PRINTS | Major intrinsic protein family signature | 207 | 229 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | PRINTS | Major intrinsic protein family signature | 247 | 267 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | TIGRFAM | MIP: MIP family channel proteins | 43 | 263 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g01193 | 283 | Gene3D | Glycerol uptake facilitator protein. | 24 | 283 | IPR023271 | - | |
Csa06g01193 | 283 | SUPERFAMILY | Aquaporin-like | 30 | 269 | IPR023271 | - | |
Csa06g01193 | 283 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 283 | IPR034294 | - | |
Csa06g01193 | 283 | PANTHER | AQUAPORIN PIP2-4-RELATED | 1 | 283 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00795 | Csa-Chr5:5577371 | Csa06g01193 | Csa-Chr6:10078532 | 1.31E-144 | dispersed | |
Csa05g00796 | Csa-Chr5:5583608 | Csa06g01193 | Csa-Chr6:10078532 | 6.33E-150 | dispersed | |
Csa06g01193 | Csa-Chr6:10078532 | Csa06g02568 | Csa-Chr6:22701550 | 2.50E-170 | dispersed | |
Csa03g03271 | Csa-Chr3:29893968 | Csa06g01193 | Csa-Chr6:10078532 | 1.72E-150 | wgd | |
Csa06g01193 | Csa-Chr6:10078532 | Csa06g02564 | Csa-Chr6:22678455 | 3.69E-145 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01193 | K09872 | - | csv:101215300 | 569.311 |