Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01193 ATGGGGAAAGACGTTGAAGTTGCTGAGCAAGGTGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCCCCTCTTATCGATCCCGAAGAGCTCACCAAATGGTCCCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTTTACGTCACCGTTTTGACCGTTATTGGTTACTCCCACGGAAGGGCCACTGACGCTGATCCCTGTAGCGGCGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGTGGTATGATCTTCATTCTTGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCTGCTGTCACTTTCGGCCTTTTCTTGGCTCGTAAAGTCTCTCTGGTTCGTGCTCTGTTATACATCATTGCTCAATGTGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAAGGCCTTCCAATCTGCTTATTATGTTAGATATAATGGTGGTGCTAACATGCTTAGCGATGGTTACAACAAAGGAACTGGGTTAGGTGCTGAAATTATTGGGACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCACGTTCCTGTTTTGGCTCCTCTCCCAATTGGGTTTGCCGTGTTTATGGTTCATTTGGCTACAATCCCCATTACCGGAACTGGAATTAACCCTGCTAGAAGTTTCGGAGCTGCTGTCATTTTCAACAAAGAGAAAGCCTGGGATGATCAATGGATCTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGCGCCATTAAAGCTCTGGGATCTTTCAGGAGCAACGCTTGA 852 48.47 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHGRATDADPCSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLSDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10078532 10080455 - CsaV3_6G013910.1 Csa06g01193 532820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01193 283 MobiDBLite consensus disorder prediction 1 24 - -
Csa06g01193 283 CDD MIP 39 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Csa06g01193 283 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 TIGRFAM MIP: MIP family channel proteins 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g01193 283 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Csa06g01193 283 SUPERFAMILY Aquaporin-like 30 269 IPR023271 -
Csa06g01193 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 283 IPR034294 -
Csa06g01193 283 PANTHER AQUAPORIN PIP2-4-RELATED 1 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00795 Csa-Chr5:5577371 Csa06g01193 Csa-Chr6:10078532 1.31E-144 dispersed
Csa05g00796 Csa-Chr5:5583608 Csa06g01193 Csa-Chr6:10078532 6.33E-150 dispersed
Csa06g01193 Csa-Chr6:10078532 Csa06g02568 Csa-Chr6:22701550 2.50E-170 dispersed
Csa03g03271 Csa-Chr3:29893968 Csa06g01193 Csa-Chr6:10078532 1.72E-150 wgd
Csa06g01193 Csa-Chr6:10078532 Csa06g02564 Csa-Chr6:22678455 3.69E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01193 K09872 - csv:101215300 569.311