Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01195 ATGGCCATGGCTATAGCTCATCACAGAGAGAGTAGTACTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGTTACACTTCAGAGCAGGTGGAGGCTCTTGAGAGAGTTTATGCCGAGTGCCCTAAGCCGAGTTCTCTTCGACGCCAGCAGCTTGTTAGGGACTGCCCAATTCTTTCCAACATAGAGCCCAAGCAGATCAAAGTCTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACGGTTAACAGAAAACTGAATGCTATGAACAAGTTGTTAATGGAGGAGAATGATCGGTTGCAGAAACAAGTGTCGCAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCATACAGTGCCGGCAGCAGCAACTGCTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGAGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCATGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTGTATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACTCTAAGATATACAATAACTTTAGAAAACGGGAGCCTTGTGGTCTGCGAGAGATCTCTCTCTGGTTCTGGTGCGGGTCCTAGCGAAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGTGGTGGGTCTATCATACACATTGTTGATCACCTAAATCTTGAGGCATGGCATGTTCCTGAGGTGTTGCGGCCACTTTATGAATCGTCAAAAGTAGTGGCCCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAGCCTGCTGTTTTGCGAACCTTTAGCCAACGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGTTTTAATGACAATGGATGGTCGCTGATCAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACGACTTCGAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCCAAGGCATCCATGCTGCTCCAAAACGTGCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAAGCCAATTCATACACATATCCAGGGATGAGACCCACAAGGTTTACCGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATCCGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCAAGGGATATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTTGGAGCTTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGATGATGCCCCATTGTTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGCTAAAGGTAGTCAACGGACTCTGGATCTAACATCAAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCAGTCTTAACTATTGCATTCCAGTTTCCTTTTGAAAGTAGCATGCAGGATAATGTTGCGAATATGGCACATCAGTATGTACGTAGCGTCATCTCCTCGGTGCAGAGAGTTGCGATGGCCATATCTCCATCTGGGGGTGGTCCAGCTCTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTCACTTTAGCACATTGGATATGCAAAAGTTATAGTTTACAATTGGGAACGGAGTTGATCAAGTCAGATTCCTTGGAAGGTGATTCCCTGTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCCCTGAAGTCTCTGCCTGTTTTCCTGTTTGCCAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGACAAGATTTTCGACGAGTCGGGTCGAAAAGCTTTATGTGCTGATTTCCCCAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGAGGAATCTGTGCATCAACAATGGGACGGCACGTTTCATATGAACAAGCTGTTGCATGGAAAGTCCTCGAGGCAGACGAAACAACAGTCCATTGCCTTGCCTTCTCATTCATAAACTGGTCTTTTGTTTGA 2526 46.63 MAMAIAHHRESSTGSITRHLDSSGKYVRYTSEQVEALERVYAECPKPSSLRRQQLVRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTVPAAATADASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSEAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWHVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYTYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGGPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLEGDSLLKNLWNHQDAILCCSLKSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKVLEADETTVHCLAFSFINWSFV* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10113736 10121075 + CsaV3_6G013930.1 Csa06g01195 532822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01195 841 SMART HOX_1 22 88 IPR001356 GO:0003677
Csa06g01195 841 Gene3D - 19 91 - -
Csa06g01195 841 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Csa06g01195 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 841 - -
Csa06g01195 841 Pfam MEKHLA domain 697 840 IPR013978 -
Csa06g01195 841 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Csa06g01195 841 SUPERFAMILY Bet v1-like 164 376 - -
Csa06g01195 841 MobiDBLite consensus disorder prediction 599 629 - -
Csa06g01195 841 CDD START_ArGLABRA2_like 159 375 - -
Csa06g01195 841 SMART START_1 164 374 IPR002913 GO:0008289
Csa06g01195 841 Gene3D - 201 379 IPR023393 -
Csa06g01195 841 CDD bZIP 77 116 - -
Csa06g01195 841 Pfam START domain 165 373 IPR002913 GO:0008289
Csa06g01195 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 841 IPR044830 GO:0003700
Csa06g01195 841 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Csa06g01195 841 CDD homeodomain 25 85 IPR001356 GO:0003677
Csa06g01195 841 Coils Coil 80 121 - -
Csa06g01195 841 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01393 Csa06g01195 CCT
Csa01g01393 Csa06g01195 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01393 Csa-Chr1:9473552 Csa06g01195 Csa-Chr6:10113736 2.16E-77 dispersed
Csa03g04545 Csa-Chr3:39619913 Csa06g01195 Csa-Chr6:10113736 0 dispersed
Csa06g01195 Csa-Chr6:10113736 Csa07g02448 Csa-Chr7:22354861 0 dispersed
Csa06g01195 Csa-Chr6:10113736 Csa01g02627 Csa-Chr1:23252566 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31994 PF01852 START 6.00E-47 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01195 K09338 - csv:101215773 1659.81