Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01198 ATGAAAGAAGCAGAGAAAATTTTAGATCCTCAACTATGGCATGCCTGTGCTGGAGGTATGGTTCAGATGCCGGCGATTAACTCCAAGGTTTTCTACTTTCCTCAGGGTCACGCCGAGCACGCTCAGGCCACTGTCGATTTCACGTCTTCGCTTAGAATCCCGCCTCTTATTCCTTGCCGAGTGCTCGCCGTCAAGTTCTTGGCTGACCTTGAAACAGATGAGGTTTTTGCTAACGTAAGAATGGTTCCACTGCCGAACAGCGACCTTAATTTTGAGGAAGAAGGTGGGTTTGGGAGTAGTGGGTCTGAGAACAATATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCAGAGACGATTTTTCCACGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTTCATGGCGAGGTTTGGAAGTTCCGCCATATATACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGTGATTCGATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAACGCGCAATTGGGTGTGCCTCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTACGGTGGATTGACGATGTTTTTGAGAGATGATGACAACAAGTTGAGTAGAAAAGGGTCTTTAAGTTCCAGTGGTAGTGGTGGGAATTTGAGGGGAAAAGGTAAAGTCAGGCCGGAATCAGTGATGGAAGCGGCAGCGCTTGCGGCGAGTGGACAGCCTTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTTTGTGTTAAGGCCTCATCGGTGAGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGTTACAGAATGTGAAGCGTGTTAGTCCATGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAATTATCACCGTTTTCTCCACCAAGAAAGAAATTTCGACTACCACAACATCCAGACTTTCCCCTCGACAGCCAATTCCCACTGTCGTCATCGTTTTCAAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCGTCCAGTTTTCAGCAGATTGATTTTCACTCTAGGATTTCTAATAGATCAGTTACAGACCACAGAGACAGCAGCAGTCATAACTCTTCGGTGTTGCAAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCCGATTCGGTGAAGAAGCATCAATTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCCAGTGACATTCGCTCACCTCCTACCGAGAAAAGTTCCTCAGATGTGAATCTGGAGAGAGTGAAGTTTCTCTCCCATGGCTCAGGATCCACTTTCAAGCAGCAAGTTTCTCCAAACAAATCACCAGGAGTAGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTGGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGACGTGGGCCGGACACTCAACCTTTCGGTCATCAGTTCATATGAAGAACTATACAGGAGGCTTGCGAATATGTTCGGAATGGAAAAACCAGACATTCTTAGCCATGTTTTATACCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGATTGACGATACTAACGGACTCGGGTTCAGACAAGCTGGGAAGGACATTGATGGATGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCTTTGAGCATATTTGCATAG 2151 47.42 MKEAEKILDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADLETDEVFANVRMVPLPNSDLNFEEEGGFGSSGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCASDHPYGWNPGGGNCIPPYGGLTMFLRDDDNKLSRKGSLSSSGSGGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHNSSVLQNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSSDIRSPPTEKSSSDVNLERVKFLSHGSGSTFKQQVSPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVISSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTLMDGMRSGENGLDASNKTGPLSIFA* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10156022 10160149 - CsaV3_6G013960.1 Csa06g01198 532825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01198 716 MobiDBLite consensus disorder prediction 540 557 - -
Csa06g01198 716 SUPERFAMILY DNA-binding pseudobarrel domain 105 217 IPR015300 -
Csa06g01198 716 MobiDBLite consensus disorder prediction 252 272 - -
Csa06g01198 716 SMART B3_2 112 214 IPR003340 GO:0003677
Csa06g01198 716 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Csa06g01198 716 MobiDBLite consensus disorder prediction 489 517 - -
Csa06g01198 716 ProSiteProfiles PB1 domain profile. 604 684 IPR000270 GO:0005515
Csa06g01198 716 PANTHER AUXIN RESPONSE FACTOR 2 693 - -
Csa06g01198 716 CDD B3_DNA 111 212 IPR003340 GO:0003677
Csa06g01198 716 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa06g01198 716 Gene3D - 319 392 - -
Csa06g01198 716 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Csa06g01198 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g01198 716 Gene3D - 604 689 - -
Csa06g01198 716 MobiDBLite consensus disorder prediction 540 559 - -
Csa06g01198 716 Gene3D - 110 214 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01699 Csa-Chr1:13379652 Csa06g01198 Csa-Chr6:10156022 7.14E-108 dispersed
Csa06g01198 Csa-Chr6:10156022 Csa06g02262 Csa-Chr6:20280542 0 dispersed
Csa06g01198 Csa-Chr6:10156022 Csa06g02577 Csa-Chr6:22760384 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31995 PF02362 B3 1.40E-21 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01198 - - csv:101216500 1395.18