Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01202 ATGGCTTATGGTAGTTCTAGATCCGTAAGGTTCCAAGACGATCTTGAATCATCTGCCCTGCCTACTATCAATGGTGGTGGTGTGACAAAGATCATATACAATATTGATGGCACACAAATACCGGAATCAAGTGGCAAGAGGACAGCAGCTTCTAGGAAGTCTGGACGATCCCTGAGAGCTAAAGTTTTATCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATACTGGATCCTAGGGGGCAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGCGGTCAGGGATAAGGTGTGTATTGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCTATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCCTGTAAGATAGCAATAAGGTATCTACGCCATGGATTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTCATTCCCAACCTTAGTGGTTCAACAATGACTAACACCAAGAACTTTCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAAGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGATTTTGTTATTTTGACAAATCTTGTAAAGATGGATTTTTTGATTGTCATAAGGTTGATGACCCTCAAAGGGATTCATGGTTTAATACGAGCAACATTAAAAGCTCATGCAATCCAAATGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCTTTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTCAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATATCTCCAATCGACAACAGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCACCACAGGCAACTACCTCCAGAACTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTGAGAAGCCTTCCCTTGGATCTCCGGAGAGATATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGTGAGAGACTTAAACCCGCTTTGAGCACAGAAGGCACATTTCTTGTGCGAGAAGGTGACCCCGTCAATGAAATGCTATTCATAATCAGAGGTCATCTTGACTCATACACCACTAACGGTGGTAGAACTGGGTTTTTCAACTCCTGTCGTATTGGTCCGGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTTGACCCTCGTCCAAGCGTTGTGCTTCCGTCTTCAACTCGCACGGTCAAAGCCATCTCCGAGGTAGAAGCATTTGCTCTCATAGCCGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTAAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCTGCATGCTTTGTTCAAGCAGCATGGCGAAGATATAAGAGACGGAAAGAGCGAGCTGAACTCAGGGCTAAAGAGAGTTATCCAACTACCAAAGTCGAGTCCCCGCTTTCACCACCAACGACATCAAACTTGGATTCACGATCAGGAAATGCTAGAAGGGCATTGAATAAGCGTTGTGTTTCAGATGCTGGGGTCGTAAGCTCATTGCAGAAGCCAGAAGAACCTGACTTCTCCATTGTTGAGGAGTAA 2103 43.03 MAYGSSRSVRFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTAASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPAVRDKVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRFCYFDKSCKDGFFDCHKVDDPQRDSWFNTSNIKSSCNPNGSFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRAKESYPTTKVESPLSPPTTSNLDSRSGNARRALNKRCVSDAGVVSSLQKPEEPDFSIVEE* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10197240 10201357 - CsaV3_6G014000.1 Csa06g01202 532829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01202 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 699 - -
Csa06g01202 700 SMART cnmp_10 480 611 IPR000595 -
Csa06g01202 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Csa06g01202 700 Gene3D Helix hairpin bin 407 471 - -
Csa06g01202 700 CDD CAP_ED 480 611 IPR000595 -
Csa06g01202 700 Pfam Ion transport protein 89 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa06g01202 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Csa06g01202 700 PANTHER - 6 699 - -
Csa06g01202 700 SUPERFAMILY cAMP-binding domain-like 410 605 IPR018490 -
Csa06g01202 700 MobiDBLite consensus disorder prediction 648 668 - -
Csa06g01202 700 MobiDBLite consensus disorder prediction 641 669 - -
Csa06g01202 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Csa06g01202 700 Gene3D - 86 404 - -
Csa06g01202 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g01202 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g01202 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g01202 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g01202 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa06g01202 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03885 Csa-Chr3:34127090 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa03g03918 Csa-Chr3:34344343 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa03g04413 Csa-Chr3:38472710 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa05g00059 Csa-Chr5:292711 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa01g02254 Csa-Chr1:19667282 Csa06g01202 Csa-Chr6:10197240 5.07E-09 transposed
Csa03g00593 Csa-Chr3:5111379 Csa06g01202 Csa-Chr6:10197240 2.12E-51 transposed
Csa03g04376 Csa-Chr3:38197021 Csa06g01202 Csa-Chr6:10197240 7.12E-13 transposed
Csa06g02573 Csa-Chr6:22724202 Csa06g01202 Csa-Chr6:10197240 1.63E-119 transposed
Csa06g01202 Csa-Chr6:10197240 Csa06g02572 Csa-Chr6:22721654 5.71E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01202 K05391 - csv:101210775 1394.79