Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01204 ATGAGGCATCAAGTGGCAGCCACCTTCCTTTCTTTAGTGGGTTTTATCTTGTTGCAACAAGTCATTTGTGCCGATACTTCTGATTTTTCTACCTCTGGCAACTGGACTTGTAGATGTTTTTCTCCTCACCAAGAAAATCAGGGATTAACACTTGGTCCAAATTGTTCTACATCTTGTTCATGTACACAAGATGTTGAAGGATCTAGACTGTGGACATGCATGTGTTCAACTGATGGCTTCCCAAAAGTTGTAGCCAATAACCGTGATTCCAACTGTTTTACGTCATGCAACTGCACTTATGGACTGCTTCCGGAGTTGCCATATTCTAAAAGGCATATTTCAAGCAATGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACAGTAGCATTCTTCATCTTAGTGGTTTGCTATCTTTGTCAAAGGGACAAGTGCCGTGTTCGAGCTCCAATAATTTCATTAGATAAGCAAATTAGCTACAACAGCTTGACTAACCTAATTAGTCACAGGAGTTCTTCAACACCAGATAGTAAGGTTATGATGGATTCTCCGGTGAATAACATCAAAGGATGTTTTTTCATGAACCAATGCTTGTTGAGAACTAAATCTAGAAGTTTGTGTGGGATCATCATCCAATTCTCGTACTCAGAGTTGGAAAATGCAACAGAAAAGTTTTCAAGCTCCCATCTTGTGGGGCGTGGGGGAAGTAGCTTTGTCTATCGTGGTGAATTGAGGGATGGTAGAACAGTGGCAGTAAAGCGGCTCAATATTCAAGGAGGACCGGATGTAGACTACTTGTTCTTAACAGAAATACAATTGTTATCAAGACTGAATCATTGTCACGTGGTGCCTCTGCTTGGTTACTGCACAGAATCAAGAGGGAAACACACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTGAGAGACTGTTTGGATGGAGCTTCAGGGAAGAAAATGGATTGGAGTACTCGGGTTACAATTGCTTTAGGAGCTGCCAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGAGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGATGATCTTCCTAGCTGTTCCAGTTCTCCTGCTAGAATGCAAGGGACTTTTGGTTATTTTGCACCGGAGTATGCAATTGTTGGAAGAGCCTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTGGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCCGGCAAAGGAGAGGAAAGCCTTGCAATATGGGCTGCTCCTCGGTTACAAAATAGTAGACGAGTTATAACAGAGTTACCGGACCCACATTTAGATGGAACGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGATGCTAGACCAACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAACGTTTTTCAGGAGAGGCTGTCACCCTGTAGTGTGGAGAGTGAACCAGACATTGCAAATCACAACATGCGTCCTTCAGGGAAACAAGTCCATACAGAGGTGATTGTTATGGATGAGATGATGGAAAGACAAGCTTCATCCCGCAAATGGCTTGACCGCTATTCACTACCATTGGATATCGATCGTTCACTTTGTGCTGACAACTATGGCAACCAAGATATTGTTTCTTTTGAGAACATGAAAACACTCGTACCCTTTACTTCAAAGGGCAACAATCTCCGAGTTCAAGGCCCAGATGACGAAACAGTAGACTTGACTGAGCCACGGTTCGAGTCATTCTGCATTGTGAATGTCAAATCTTCCTCATAG 1935 41.81 MRHQVAATFLSLVGFILLQQVICADTSDFSTSGNWTCRCFSPHQENQGLTLGPNCSTSCSCTQDVEGSRLWTCMCSTDGFPKVVANNRDSNCFTSCNCTYGLLPELPYSKRHISSNVVVIILSLCVIIITVAFFILVVCYLCQRDKCRVRAPIISLDKQISYNSLTNLISHRSSSTPDSKVMMDSPVNNIKGCFFMNQCLLRTKSRSLCGIIIQFSYSELENATEKFSSSHLVGRGGSSFVYRGELRDGRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLNHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDGASGKKMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSAGKGEESLAIWAAPRLQNSRRVITELPDPHLDGTFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVFQERLSPCSVESEPDIANHNMRPSGKQVHTEVIVMDEMMERQASSRKWLDRYSLPLDIDRSLCADNYGNQDIVSFENMKTLVPFTSKGNNLRVQGPDDETVDLTEPRFESFCIVNVKSSS* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10211191 10218636 - CsaV3_6G014020.1 Csa06g01204 532831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01204 644 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE NCRK ISOFORM X1 1 643 - -
Csa06g01204 644 Pfam Protein kinase domain 229 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01204 644 CDD STKc_IRAK 233 510 - -
Csa06g01204 644 Gene3D Phosphorylase Kinase; domain 1 201 307 - -
Csa06g01204 644 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Csa06g01204 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Csa06g01204 644 ProSiteProfiles Protein kinase domain profile. 227 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01204 644 PANTHER OS01G0750732 PROTEIN 1 643 - -
Csa06g01204 644 SMART serkin_6 227 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01204 644 Gene3D Transferase(Phosphotransferase) domain 1 308 530 - -
Csa06g01204 644 SUPERFAMILY Protein kinase-like (PK-like) 210 507 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01204 Csa-Chr6:10211191 Csa04g00130 Csa-Chr4:737541 6.59E-70 dispersed
Csa06g01204 Csa-Chr6:10211191 Csa05g00641 Csa-Chr5:4259160 4.27E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78348 PF00069 Pkinase 4.80E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01204 - - csv:101217673 1301.58