Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01206 ATGGCTTCCTCTAGACTCATTTCTCCAACTCCTAGTTCTAGTCCTAGTCCTATTGAGGCTCAAAAGATCGACACTTCATGGCATGATGGACGTGCCACTTTCTATGGTGACTTTAGAGGTGGTGAAACTATGGAAGGAGCTTGTGGATATGGCAATCTATTCCACCAGGGTTATGGCCTAGCAACAGCAGCACTAAGCACAGCATTGTTCAACAACGGTGAAGCTTGTGGAGCATGTTTTGAGATAATGTGTGTGAACGACGAACATAAATGGTGTAAACCAAATGCAGGCACAATCAAAATAACAGCTACAAACTTCTGCCCTCCAAACTACACAAAAACACAAGACATTTGGTGCAATCCACCCCAACGCCATTTTGATCTATCTCTCTACATGTTCACCAAAATGGCTCCTTACAGGGCTGGGGTCATTCCTGTTCGCTACCGTAGAACACGTTGCCATAAACTAGGAGGCATACGGTTTGAGTTGAAAGGGAATCCATATTGGCTTCTTGTTTTGCCCTACAATGTTGGTGGTGCTGGTGACGTTGTTGACCTTCAGATTAAAGGCTCTTCTACTGGCCGTTGGCTTCCAATGAAAAGAAATTGGGGCCAAAATTGGGAAGCTGACAGTTATTTGGTTGGGCAGAGTTTGTCTTTTAGAGTTACTACTAGTGATTGGAAGACTAAAGAGTTTGATAATGTTGTGCCTAGTTCTTGGGAGTTTGGCCAGAACTTTGTAGCAAACTATAATTTCTAA 759 43.35 MASSRLISPTPSSSPSPIEAQKIDTSWHDGRATFYGDFRGGETMEGACGYGNLFHQGYGLATAALSTALFNNGEACGACFEIMCVNDEHKWCKPNAGTIKITATNFCPPNYTKTQDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRTRCHKLGGIRFELKGNPYWLLVLPYNVGGAGDVVDLQIKGSSTGRWLPMKRNWGQNWEADSYLVGQSLSFRVTTSDWKTKEFDNVVPSSWEFGQNFVANYNF* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10229418 10230656 - CsaV3_6G014040.1 Csa06g01206 532833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01206 252 PANTHER EXPANSIN-A21-RELATED 25 252 - -
Csa06g01206 252 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Csa06g01206 252 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Csa06g01206 252 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Csa06g01206 252 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Csa06g01206 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Csa06g01206 252 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Csa06g01206 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Csa06g01206 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Csa06g01206 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 158 IPR007112 -
Csa06g01206 252 SMART dpbb_1 62 148 IPR007112 -
Csa06g01206 252 Pfam Lytic transglycolase 62 148 IPR009009 -
Csa06g01206 252 SUPERFAMILY Barwin-like endoglucanases 26 176 IPR036908 -
Csa06g01206 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Csa06g01206 252 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g01206 252 Gene3D - 158 252 IPR036749 -
Csa06g01206 252 PANTHER EXPANSIN-A15 25 252 IPR002963 GO:0009664
Csa06g01206 252 MobiDBLite consensus disorder prediction 1 22 - -
Csa06g01206 252 Gene3D - 11 154 IPR036908 -
Csa06g01206 252 SUPERFAMILY PHL pollen allergen 157 246 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00873 Csa-Chr4:6212596 Csa06g01206 Csa-Chr6:10229418 1.00E-142 dispersed
Csa06g01206 Csa-Chr6:10229418 Csa04g01497 Csa-Chr4:14702397 1.49E-93 dispersed
Csa06g01206 Csa-Chr6:10229418 Csa05g01856 Csa-Chr5:21845772 2.66E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01206 - - csv:101211019 535.028