Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01208 ATGGAACCCACCACCTGCTACACTAATGGCCACGCTTCAATGGCGGATCCCTTCTGCCTGAAAGATCCCTTGTACTGGGCCGCCGCCGCTGATGGGCTTAAAGGGAGTCATCTCGACGAGGTGAAGAAAATGGTGGAGGAGTACCGGCGTGGGGTGGTGCGGCTTGGCGGAGAGAGTTTGACTATTGGCCAGGTGGCGGCTGTGGCCTTGAACGACGGCGGAGTTAAGGTGGAACTGAATGAGGCGGCGAGAGAGGGAGTTAAGGCGAGCAGTGATTGGGTAATGGAGAGTATGAAGAAAGGTACGGATAGCTACGGAGTTACTACTGGATTTGGTGCAACCTCCCATCGGAGAACAAATCAAGGAGCTGCTCTGCAGAAGGAGCTTATTCGATTCCTGAACGCTGGGATATTTGGGAATGGAACTGAGTCCAACCACACGTTGCCTCACACTGCTACAAGAGCTGCTATGTTAGTCAGAATCAATACTCTTCTTCAAGGCTATTCTGGTATTAGATTTGAAATTTTGGAGTCTATTACAAAGCTCCTTAACCACAATGTCACACCTTGCCTTCCCTTGCGAGGCACTATCACGGCTTCCGGTGATTTGGTTCCTTTTTCTTACATCGCTGGTTTTTTGACTGGTCGTCCTAATGCCAAGGCTGTTGGCCCAACCGGTGATCTCCTTGATGCTGGAGCAGCTTTTAAACTCGCTGGCATTGATGGTGGATTCTTTGAGTTGCAGCCTAAAGAGGGTCTTGCGCTTGTTAATGGGACGGGTGTTGGATCTGGTTTGGCGTCTATTGTGTTGTTCGAGGCCAATGTATTGGCTTTGTTGTCCGAGGTTATTTCAGCCATCTTTGCTGAAGTGATGCAAGGGAAGCCTGAGTTTACTGATCATTTAACTCACAAATTGAAACATCATCCTGGTCAAATCGAAGCAGCTGCCATTATGGAACACCTTTTGGATGGAAGTGCTTTCGTAAAAGATGCTAAGAGGTTACATGAGTTGGACCCTCTTCAAAAGCCAAAACAAGATCGTTACGCTCTTCGAACTTCACCTCAATGGTTAGGCCCTCAAATTGAAGTGATTCGACATTCAACAAAATCGATTGAGAGAGAGATCAACTCGGTAAATGACAATCCATTGATTGATGTTTCAAGGAATAAAGCTCTACATGGAGGCAATTTTCAAGGAACTCCAATTGGAGTGTCCATGGATAATACTAGATTGGCTCTGGCTTCTATCGGAAAGCTTTTGTTTGCTCAATTCTCCGAACTGGTGAATGATTTCTATAACAATGGATTGCCTTCAAATCTTTCAGGAGGAAGTAATCCAAGCTTGGATTATGGATTTAAAGGCGCCGAAATCGCCATGGCTTCCTATTGCTCAGAATTACAATACTTAGCAAATCCAGTCACCAATCATGTTCAAAGTGCAGAACAACACAACCAAGACGTGAATTCATTGGGTCTAATCTCATCAAGAAAAACAGCTGAGGCAATAGATATCTTGAAGCTAATGAGCACAACATTCCTAGTGGCTCTCTGCCAAGCCATAGATTTGAGACACGTAGAGGAGAATCTGAAAAGCACAGTGAAAAACACAGTGAGTCAAGTCGCCAAGAAGGTGTTAACCATTGGAGTAAATGGAGAGCTTCATCCATCAAGATTCTGTGAGAAAGATTTGCTGAAAGTCATTGATAGAGAACATTGTTTTGCTTACATTGATGATCCATGCAGCATGACATATCCATTAATGCAAAAACTAAGGCAAGTTCTTGTTGAACATGCATTGAAGAACAATGATGATCTGAAGAATTCAAACTCCTCAATCTTTCTAAAGATCGGAGCTTTTGAGGAAGAACTAAAAACCCTTTTGCCTAAAGAAGTAGAAAGTGGAAGACAAGCCATTTCAAAAGGAAAAGCAACAATTCCCAACAAGATAAAGGATTGCAGATCATACCCAATTTACAGATTTGTTAGAGAAGAATTGGGAACTGATATGTTGACAGGTGAAAAGGTAAAATCTCCTGGTGAAGAATTTGACAAAGTTTTTAGTGCAATTTGTGAAGGGAAAATCATTGATCCTTTGCTTGAATGCCTTCAAAGTTGGAATGGGACTCCTCTTCCTATAAATTGA 2142 43.42 MEPTTCYTNGHASMADPFCLKDPLYWAAAADGLKGSHLDEVKKMVEEYRRGVVRLGGESLTIGQVAAVALNDGGVKVELNEAAREGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGFLTGRPNAKAVGPTGDLLDAGAAFKLAGIDGGFFELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHLLDGSAFVKDAKRLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHVEENLKSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREHCFAYIDDPCSMTYPLMQKLRQVLVEHALKNNDDLKNSNSSIFLKIGAFEEELKTLLPKEVESGRQAISKGKATIPNKIKDCRSYPIYRFVREELGTDMLTGEKVKSPGEEFDKVFSAICEGKIIDPLLECLQSWNGTPLPIN* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10244020 10248610 + CsaV3_6G014060.1 Csa06g01208 532835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01208 713 CDD PAL-HAL 58 523 IPR001106 -
Csa06g01208 713 Gene3D Fumarase/aspartase (Central domain) 261 707 - -
Csa06g01208 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Csa06g01208 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
Csa06g01208 713 Gene3D - 526 647 IPR023144 -
Csa06g01208 713 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 1 713 - -
Csa06g01208 713 PANTHER HISTIDINE AMMONIA-LYASE 1 713 IPR001106 -
Csa06g01208 713 Gene3D - 15 259 IPR024083 -
Csa06g01208 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01208 Csa-Chr6:10244020 Csa06g02581 Csa-Chr6:22809979 0 dispersed
Csa06g01208 Csa-Chr6:10244020 Csa06g02580 Csa-Chr6:22800389 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01208 K10775 - csv:101218156 1409.82