Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01233 ATGCTTTCTCTGCGTTCATGTTTCTATCTACGTCCCATCACATTGCCTCATCCCCAATTCAAGAAACTCATTTTCTCCAACAATTCTTCCTTCTCTTTCAAACCCATATCTCATAATTTTGTTTCACCAATGTCTTCTCGTCCTTCCGCCTTCGATGCTCTCATGTCTGGTGCTCGTGCCGCTGCCAAGAAGAAGCCTGCTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGATTCTCCTCTGAAACCTAGCTCTTTCCTTGCTCTTGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAGTTTCAAATTTGGACGATCATGGAGGTACTCATTTGGATGGTGTCGATTTGGGAGAAACCAAATTGCGTCAGGATAATGATGGCGGTGTTGGAGCCAAGATTGGGCCATTTGGGAACAAGACTTGTGCGTCTAGTGTTCAAGAAAGAACAGCGAAATTGAAGAGCTCTACTGCAGAGTTGAAAAAGAAGGCTAAGGATTTCAACTCGAAGAATGTCGCATGTTGGAAAGAGGGTGAACGTGTTCCCTTTTTGTTTCTGTGTTTGGGGTTCGATATGATTTCGGAGGAGTCCAGTAGGATTACTATCACTGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTTTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAGCAGTACAAGGAATTGGGAGATTTGGGTCTTGTTGCTAAAGCTAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCTTTAACTGTTACCAAAGTATTTGACACATTTCGACTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAATCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATTCTGAAAAGCACTCAACACCACCTCCGAATATTCAATCCCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTTCCAGTTTATGACAAACTTGTTCCTGCCCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAGCGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATATAGTCGAAATGCTGAACGAAACACAGGAAAGTTCCCTGATGTTGTTCTCACAGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTACCCTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCTGTGAGTGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCACTTATCCAAAGAGAACTTAATGTTCGTCGAGAGCTTCTCTACAATTCATTTATTGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCCACTTATGAGCCTTCCAAGAGGTCTCATAACTGGCTAAAACTGAAGAAGGATTACATAGACAGCATAGGGGATTCACTTGATCTGGTACCGATTGCTGCCTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATCCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCAACTGAGGTTTGGGAGGTTAAAGCTGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGACTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGGAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAGAACAATCAAGATGACAATGGAGACGACTAA 2406 42.35 MLSLRSCFYLRPITLPHPQFKKLIFSNNSSFSFKPISHNFVSPMSSRPSAFDALMSGARAAAKKKPANSSPKKRKALDSLDSPLKPSSFLALESTPPVESQCGSSVSNLDDHGGTHLDGVDLGETKLRQDNDGGVGAKIGPFGNKTCASSVQERTAKLKSSTAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYSEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYNSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVREDKNPEEASSSEQVADMYNAQKHNHQNNQDDNGDD* 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10403304 10411481 - CsaV3_6G014300.1 Csa06g01233 532860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01233 801 Pfam DNA ligase N terminus 187 362 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Csa06g01233 801 ProSitePatterns ATP-dependent DNA ligase signature 2. 607 633 IPR016059 GO:0003909
Csa06g01233 801 ProSiteProfiles ATP-dependent DNA ligase family profile. 535 671 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Csa06g01233 801 MobiDBLite consensus disorder prediction 776 792 - -
Csa06g01233 801 MobiDBLite consensus disorder prediction 94 111 - -
Csa06g01233 801 PANTHER DNA LIGASE 1 133 801 - -
Csa06g01233 801 Gene3D - 638 800 IPR012340 -
Csa06g01233 801 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 453 461 IPR016059 GO:0003909
Csa06g01233 801 Gene3D - 162 431 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Csa06g01233 801 Pfam ATP dependent DNA ligase domain 429 633 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Csa06g01233 801 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 133 801 - -
Csa06g01233 801 MobiDBLite consensus disorder prediction 62 82 - -
Csa06g01233 801 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 421 639 - -
Csa06g01233 801 Gene3D - 439 637 - -
Csa06g01233 801 MobiDBLite consensus disorder prediction 767 801 - -
Csa06g01233 801 CDD OBF_DNA_ligase_I 641 786 - -
Csa06g01233 801 MobiDBLite consensus disorder prediction 94 127 - -
Csa06g01233 801 CDD Adenylation_DNA_ligase_I_Euk 418 636 - -
Csa06g01233 801 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 169 420 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Csa06g01233 801 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 245 784 IPR000977 GO:0003910|GO:0005524|GO:0071897
Csa06g01233 801 Pfam ATP dependent DNA ligase C terminal region 658 769 IPR012309 GO:0003910|GO:0006281|GO:0006310
Csa06g01233 801 Gene3D DNA ligase/mRNA capping enzyme 458 583 - -
Csa06g01233 801 SUPERFAMILY Nucleic acid-binding proteins 641 787 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00669 Csa-Chr2:5143162 Csa06g01233 Csa-Chr6:10403304 9.18E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01233 K10747 - csv:101213447 1539.63