Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01239 ATGGAGCAATTTGGGAGGCATTTAATGACGGACATCAACGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTTGATCAATATGTGAATCTGATTCGTGGAGGGAACGAAACTCCGATCTTCAACAATAACTTTGATCTCGATTTCATGAACGGTTGCTTGATCGAGAATCGTGTGGTGGATCAAAGCTTGGAATACATTGTAGATTCAAATATGGTGATGAATTCTGATCCAAATTCTCTGTTTAGTACATTGGAGAGTTTCAATAGCATCATGAAAGAAGTTGAAGATGAAGACGAAGACGAAGATGAAAACGAGTCTGTAGAGAATTCTTCTTCCACAACCTCAAAGAAACCTAAGGCAGATAGAACAAGAACTTTGATTTCTGAAAGAAGAAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACTAAGATGGACAAAGCTTCCATCGTTGGAGATGCAGTGTTGTATGTGAAAGAGCTACAAATGCAAGCAAAGAAGCTCAAATCAGAAATATCAGTTTTGGAATCTTCAATCAACGAAACACAAAAAGTTCATAGAGATCAAACCAAAAAGAAAATTATTCAAACTTCATATTCTGACCAATTCCTCCCCACCAAAATAATTCAGCTGGATGTGTTTCAAGTAGAGGAAAGAGGGTTTTATTTGAGGCTAGTTTGCAAGATGGGTGAAAGAGTAGCCATGTCTCTTTACAAAGTTCTTGAATCTCTCACCAGCTTCATTATTCAAAGCTCCAATTTGACTTCTGCTTCTGACAGATTCATTCTCACTGCTACAATTAATGTGAGGGATTGTGAGGTGGACATGAATTTGCCAAATCTGAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 924 37.77 MEQFGRHLMTDINDQFELQDFIHGDNFDQYVNLIRGGNETPIFNNNFDLDFMNGCLIENRVVDQSLEYIVDSNMVMNSDPNSLFSTLESFNSIMKEVEDEDEDEDENESVENSSSTTSKKPKADRTRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINETQKVHRDQTKKKIIQTSYSDQFLPTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFIIQSSNLTSASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10430376 10432021 + CsaV3_6G014370.1 Csa06g01239 532866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01239 307 Coils Coil 169 196 - -
Csa06g01239 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Csa06g01239 307 Pfam Helix-loop-helix DNA-binding domain 125 173 IPR011598 GO:0046983
Csa06g01239 307 SMART finulus 129 178 IPR011598 GO:0046983
Csa06g01239 307 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 78 306 - -
Csa06g01239 307 Gene3D - 113 203 IPR036638 GO:0046983
Csa06g01239 307 MobiDBLite consensus disorder prediction 118 132 - -
Csa06g01239 307 MobiDBLite consensus disorder prediction 96 110 - -
Csa06g01239 307 MobiDBLite consensus disorder prediction 96 132 - -
Csa06g01239 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983
Csa06g01239 307 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 78 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02184 Csa-Chr1:18957508 Csa06g01239 Csa-Chr6:10430376 1.37E-19 dispersed
Csa05g02335 Csa-Chr5:25725825 Csa06g01239 Csa-Chr6:10430376 2.85E-18 dispersed
Csa06g01239 Csa-Chr6:10430376 Csa01g00990 Csa-Chr1:6174783 3.17E-14 dispersed
Csa06g01239 Csa-Chr6:10430376 Csa02g00670 Csa-Chr2:5179234 7.37E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31998 PF00010 HLH 2.00E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01239 - - csv:101213681 565.459