Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01286 ATGAGGGCTTTGCATTTGCAGCTTAGAGTTGACGCAAATCTCGTAAAGCCATTTTGTCATCTCTGCTTTGCTTCATCTCTGAATGTCTCGCCATTGATTGCTTTTCGACCTATAAAATACCCCCATCTTCAGAAATTCAATCCTTCACGAAGTTCTCGCCGAACCCATTTCTCAACATCATTCGTAGCTTCTTCCATGGCCGATTCTTCTCTTTCCAGAAGCTCAGAAACAGAGACAAAACCTTTCTCTGTGCTTTTCGTTTGCTTAGGTAACATCTGTAGAAGCCCAGCTGCTGAAGGAGTATTCAGGAACTTGGTGACGAAGAAGGATCTCGATTCCAAATTCACTATCGATTCTGCTGGTACCATTGGTTATCATGAGGGTAATGAGGCCGACCCAAGAATGAGGGCAGCCTCTAAACGACGTGGGATAGCCATAACATCCATCTCGAGGCCAATCCAGCCATCCGATTTTGTGAATTTTGATCTTATTCTTGCCATGGACAAGCAAAACAGAGAGGATATTTTGGGGGCTTTTGAACGTTGGTGCACAAAGAATGGCCTTCCTCCTGATTCACATAAAAAGGTCAAGTTAATGTGCTCCTATTGTAAAAAGCATGACGAAACCGAAGTACCGGACCCTTATTACGGAGGGCAGCAAGGTTTTGAGAAGGTTCTGGACTTGCTTGAAGATGCCTGTGAATCACTGTTGGAAAGCATCTTAGCAGAGAACAAACACATTTCAGATTAA 750 43.73 MRALHLQLRVDANLVKPFCHLCFASSLNVSPLIAFRPIKYPHLQKFNPSRSSRRTHFSTSFVASSMADSSLSRSSETETKPFSVLFVCLGNICRSPAAEGVFRNLVTKKDLDSKFTIDSAGTIGYHEGNEADPRMRAASKRRGIAITSISRPIQPSDFVNFDLILAMDKQNREDILGAFERWCTKNGLPPDSHKKVKLMCSYCKKHDETEVPDPYYGGQQGFEKVLDLLEDACESLLESILAENKHISD* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10761966 10764366 - CsaV3_6G014840.1 Csa06g01286 532913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01286 249 Pfam Low molecular weight phosphotyrosine protein phosphatase 84 237 IPR023485 -
Csa06g01286 249 SUPERFAMILY Phosphotyrosine protein phosphatases I 80 240 IPR036196 -
Csa06g01286 249 PRINTS LMW phosphotyrosine protein phosphatase signature 84 101 IPR017867 GO:0004725|GO:0006470
Csa06g01286 249 PRINTS LMW phosphotyrosine protein phosphatase signature 127 143 IPR017867 GO:0004725|GO:0006470
Csa06g01286 249 PRINTS LMW phosphotyrosine protein phosphatase signature 211 226 IPR017867 GO:0004725|GO:0006470
Csa06g01286 249 CDD LMWPTP 83 238 - -
Csa06g01286 249 Gene3D - 64 245 - -
Csa06g01286 249 SMART LMWPc_2 82 239 IPR023485 -
Csa06g01286 249 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 43 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01286 K25307 wzb, etp; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] - csv:101207515 486.493
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1176 Blo03g01059 . . . . . Bma14g00419 . . . . . . . . . . . . . . . . . Cla02g02139 Cam02g2272 Cec02g2310 Cco02g2353 Clacu02g2250 Cmu02g2183 Cre02g2507 . . Cone18ag0218 Cone11ag1360 . Csa06g01286 Chy11g00890 . . . Bda07g00669 . . Bpe11g00849 . . Sed05g1209 Cmo02g01379 . Cma02g01340 . Car02g01126 . . . Bhi10g00068 Tan05g0144 Cmetu11g0267 . Hepe08g0239 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011691 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01286 Csa_Chr06 FPKM 8.205787 10.257492 9.352357 10.994938 15.161041 12.865362 16.291895 8.73807 7.693165 7.896608
Csa06g01286 Csa_Chr00 FPKM 7.012745 7.005735 3.655518 4.328198 5.113132 6.070316 5.507826 2.853236 3.772966 3.372567