Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01287 ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAGTCAACAGAGGAATTTGATTCTGAGAAAGCTGGGACGAGTTATGGGCTACATGTAGGAAAAAAGTTTTCTATAGAGGATGACATTAATCGTTTGTTTCAAGCAATTGATATCAGATCCTTGCGTAAGAGGTCAGGCCAACAACGGGAAGCTGATAAAGATGCTTTGCGAAAGAGTGCAATGAAAAGACCAGTTAGAGTAGGTCCGTCTCACATGGCAGGGATTGGAATTTCTGAGCCCGCGAGTTTAAAGCAGGCTTTGAGGGGCTTATGTATTTCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGCTTCACCCAGAATCTCTGAAGCTGGAACTATCAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATTTGGTGTGCCTGTAAATGAAAGTAAAGCAAATTTGGTAGAAATTTCCATTGTTTCAGAGAGACTTATGTCAACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAAACGAGGCTGATATACCAAACCAAGGAGCTGAATCTTCTTCTTTCAAGAATACTGGGGTATCAGAAGAGGCGAGTGTGGATAGATTGATGTCAAAGGATCTTATAGTTAATACAGCTACTGAGGTGGCAAGTATAGAGCCACCTGGTGAGGTGGGAAAACTTAAATCTCCTTCCTTTACTCCTTCTGGTGAGAAGGATCTGGCTGCGAACAGCATGGCCATTTCCTCAAATGAAGATTTGGCAAGAAATTCAGTGCCAGAGAAGGAGAAAGGTACAATGAGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGCTGTCAGGCCAAACAAAACAGCTTTCAGTAATACACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAAACAAATTCCTCTCCTAGTATATTTGATGTCTGCACAGTAACGGCTGACACTAATTTGGGTACCATTGCAGAAAAGTCTGAGAATCAGATGCCAGAAAATGCACAACTTCATGAGATTAAAGAAGAGGATATAGGTTCTTCCGTCTCATGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTGGTAAACACAGAATCTAGTAGACCTGGTACATCTCTCAACTGCTTTAACAGGAATAGACCAACTATTATGGCATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGTATTCTCAGTGGATCGAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGACTTGAAATGGGAAGCTATCCACAACCTTCAGGATCAACATAAATGCCTAGGTTCAAGAAACTTCAAGTTGCTTAGGAGACTTGGTCTCGGGGATATTGGGACTGTGTATCTCTCTGAGCTTTGTGATTCAAGCTGTCTTTTTGCTATGAAAGTGATGGATAAGGAGTTCTTGGAAAGCAGAAAAAAAATTCTTCGAGCACAAACTGAGAGAGAGATACTGCAAATGCTCGATCATCCATTTCTCCCTACATTATATGCACATTTTGAGACGGATAAGCACTTGTGCTTGGTCATGGACTACTGTCCCAGTGGAGATCTCCATGTACTGCGTCAGAAGCAACCAAGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCACTGGAGTACTTACACATGCTAGGAGTTGTTTACCGAGACTTGAAACCTGAAAACGTCCTGGTTCGAGAAGATGGGCACATCATGCTCACGGACTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATTTCCAGTTGTGGAATCCACTAAGAGGACATTGAATCCTTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTTTCGTGCTTCACTCCCAAAGTTCTATCTGCTCCATACAAATCCCGGAGAACAAAAGCAGATTATCAGGCTAGTCTATTACCACAGCTTATAGTCGAACCAACTGGCGCACGGTCGAATTCATTTGTAGGAACCCATGAATACCTCGCCCCTGAGATTGTCAAGGGTGAAAGCCATGGGAGCGCTGTTGATTGGTGGACATATGGCATTTTCCTGTTTGAGCTACTCTACGGTAGGACTCCCTTCAAAGGTTCAGCAAACGAGGACACATTAACGAACATAGTATCTCAAACTCTCAAGTTCCCTGATTGCCCATTAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGACAAAGGAGCCTGAAAACCGATTAGGCTCGACAAAAGGAGCTGTTGAGATTAAGCAGCACCCGTTTTTTGAAGGCCTCAATTGGGCTCTGATACGTTGTGCAACACCACCTGAGCTTCCCAAGTTTTTTGATGGTGCAACTAGTACAATGCCAGTAGATTCTGGGGAGAATACAAAGCGTAGAGATCTCGAAAATATTGAAACGGATGCAGCAATGTTCGACCTGTTTTAG 2577 42.88 MTTLASTSEIVESTEEFDSEKAGTSYGLHVGKKFSIEDDINRLFQAIDIRSLRKRSGQQREADKDALRKSAMKRPVRVGPSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRSVASPRISEAGTIKRLYRAVVVEANGFGVPVNESKANLVEISIVSERLMSTFQNKMPELLHKNEADIPNQGAESSSFKNTGVSEEASVDRLMSKDLIVNTATEVASIEPPGEVGKLKSPSFTPSGEKDLAANSMAISSNEDLARNSVPEKEKGTMSCLSSLSSSGSAVRPNKTAFSNTRFIKPIFRTKNFVKKKAKLETNSSPSIFDVCTVTADTNLGTIAEKSENQMPENAQLHEIKEEDIGSSVSCNITLGVEVSGNVVNTESSRPGTSLNCFNRNRPTIMASDERSRSREKGMFSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHNLQDQHKCLGSRNFKLLRRLGLGDIGTVYLSELCDSSCLFAMKVMDKEFLESRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHLCLVMDYCPSGDLHVLRQKQPSKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSFPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSAPYKSRRTKADYQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGESHGSAVDWWTYGIFLFELLYGRTPFKGSANEDTLTNIVSQTLKFPDCPLVSFHARDLIRCLLTKEPENRLGSTKGAVEIKQHPFFEGLNWALIRCATPPELPKFFDGATSTMPVDSGENTKRRDLENIETDAAMFDLF* 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10764787 10767787 - CsaV3_6G014850.1 Csa06g01287 532914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01287 858 SMART serkin_6 473 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01287 858 MobiDBLite consensus disorder prediction 402 445 - -
Csa06g01287 858 Pfam Protein kinase domain 474 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01287 858 Pfam Protein kinase domain 702 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01287 858 PANTHER FLIPPASE KINASE 1-RELATED 1 835 - -
Csa06g01287 858 Gene3D Transferase(Phosphotransferase) domain 1 700 823 - -
Csa06g01287 858 ProSiteProfiles Protein kinase domain profile. 473 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01287 858 MobiDBLite consensus disorder prediction 54 74 - -
Csa06g01287 858 SUPERFAMILY Protein kinase-like (PK-like) 451 825 IPR011009 -
Csa06g01287 858 MobiDBLite consensus disorder prediction 413 445 - -
Csa06g01287 858 MobiDBLite consensus disorder prediction 54 72 - -
Csa06g01287 858 CDD STKc_phototropin_like 473 828 - -
Csa06g01287 858 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 835 - -
Csa06g01287 858 Gene3D Phosphorylase Kinase; domain 1 472 552 - -
Csa06g01287 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Csa06g01287 858 Gene3D Transferase(Phosphotransferase) domain 1 553 621 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01551 Csa06g01287 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01287 Csa-Chr6:10764787 Csa06g03433 Csa-Chr6:28317839 3.02E-54 dispersed
Csa06g01287 Csa-Chr6:10764787 Csa06g01288 Csa-Chr6:10775950 8.47E-138 tandem
Csa07g01557 Csa-Chr7:15913650 Csa06g01287 Csa-Chr6:10764787 2.24E-73 transposed
Csa06g01287 Csa-Chr6:10764787 Csa06g02664 Csa-Chr6:23445828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78351 PF00069 Pkinase 5.00E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01287 - - csv:101206786 1644.02