Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01287 | ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAGTCAACAGAGGAATTTGATTCTGAGAAAGCTGGGACGAGTTATGGGCTACATGTAGGAAAAAAGTTTTCTATAGAGGATGACATTAATCGTTTGTTTCAAGCAATTGATATCAGATCCTTGCGTAAGAGGTCAGGCCAACAACGGGAAGCTGATAAAGATGCTTTGCGAAAGAGTGCAATGAAAAGACCAGTTAGAGTAGGTCCGTCTCACATGGCAGGGATTGGAATTTCTGAGCCCGCGAGTTTAAAGCAGGCTTTGAGGGGCTTATGTATTTCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGCTTCACCCAGAATCTCTGAAGCTGGAACTATCAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATTTGGTGTGCCTGTAAATGAAAGTAAAGCAAATTTGGTAGAAATTTCCATTGTTTCAGAGAGACTTATGTCAACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAAACGAGGCTGATATACCAAACCAAGGAGCTGAATCTTCTTCTTTCAAGAATACTGGGGTATCAGAAGAGGCGAGTGTGGATAGATTGATGTCAAAGGATCTTATAGTTAATACAGCTACTGAGGTGGCAAGTATAGAGCCACCTGGTGAGGTGGGAAAACTTAAATCTCCTTCCTTTACTCCTTCTGGTGAGAAGGATCTGGCTGCGAACAGCATGGCCATTTCCTCAAATGAAGATTTGGCAAGAAATTCAGTGCCAGAGAAGGAGAAAGGTACAATGAGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGCTGTCAGGCCAAACAAAACAGCTTTCAGTAATACACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAAACAAATTCCTCTCCTAGTATATTTGATGTCTGCACAGTAACGGCTGACACTAATTTGGGTACCATTGCAGAAAAGTCTGAGAATCAGATGCCAGAAAATGCACAACTTCATGAGATTAAAGAAGAGGATATAGGTTCTTCCGTCTCATGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTGGTAAACACAGAATCTAGTAGACCTGGTACATCTCTCAACTGCTTTAACAGGAATAGACCAACTATTATGGCATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGTATTCTCAGTGGATCGAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGACTTGAAATGGGAAGCTATCCACAACCTTCAGGATCAACATAAATGCCTAGGTTCAAGAAACTTCAAGTTGCTTAGGAGACTTGGTCTCGGGGATATTGGGACTGTGTATCTCTCTGAGCTTTGTGATTCAAGCTGTCTTTTTGCTATGAAAGTGATGGATAAGGAGTTCTTGGAAAGCAGAAAAAAAATTCTTCGAGCACAAACTGAGAGAGAGATACTGCAAATGCTCGATCATCCATTTCTCCCTACATTATATGCACATTTTGAGACGGATAAGCACTTGTGCTTGGTCATGGACTACTGTCCCAGTGGAGATCTCCATGTACTGCGTCAGAAGCAACCAAGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCACTGGAGTACTTACACATGCTAGGAGTTGTTTACCGAGACTTGAAACCTGAAAACGTCCTGGTTCGAGAAGATGGGCACATCATGCTCACGGACTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATTTCCAGTTGTGGAATCCACTAAGAGGACATTGAATCCTTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTTTCGTGCTTCACTCCCAAAGTTCTATCTGCTCCATACAAATCCCGGAGAACAAAAGCAGATTATCAGGCTAGTCTATTACCACAGCTTATAGTCGAACCAACTGGCGCACGGTCGAATTCATTTGTAGGAACCCATGAATACCTCGCCCCTGAGATTGTCAAGGGTGAAAGCCATGGGAGCGCTGTTGATTGGTGGACATATGGCATTTTCCTGTTTGAGCTACTCTACGGTAGGACTCCCTTCAAAGGTTCAGCAAACGAGGACACATTAACGAACATAGTATCTCAAACTCTCAAGTTCCCTGATTGCCCATTAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGACAAAGGAGCCTGAAAACCGATTAGGCTCGACAAAAGGAGCTGTTGAGATTAAGCAGCACCCGTTTTTTGAAGGCCTCAATTGGGCTCTGATACGTTGTGCAACACCACCTGAGCTTCCCAAGTTTTTTGATGGTGCAACTAGTACAATGCCAGTAGATTCTGGGGAGAATACAAAGCGTAGAGATCTCGAAAATATTGAAACGGATGCAGCAATGTTCGACCTGTTTTAG | 2577 | 42.88 | MTTLASTSEIVESTEEFDSEKAGTSYGLHVGKKFSIEDDINRLFQAIDIRSLRKRSGQQREADKDALRKSAMKRPVRVGPSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRSVASPRISEAGTIKRLYRAVVVEANGFGVPVNESKANLVEISIVSERLMSTFQNKMPELLHKNEADIPNQGAESSSFKNTGVSEEASVDRLMSKDLIVNTATEVASIEPPGEVGKLKSPSFTPSGEKDLAANSMAISSNEDLARNSVPEKEKGTMSCLSSLSSSGSAVRPNKTAFSNTRFIKPIFRTKNFVKKKAKLETNSSPSIFDVCTVTADTNLGTIAEKSENQMPENAQLHEIKEEDIGSSVSCNITLGVEVSGNVVNTESSRPGTSLNCFNRNRPTIMASDERSRSREKGMFSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHNLQDQHKCLGSRNFKLLRRLGLGDIGTVYLSELCDSSCLFAMKVMDKEFLESRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHLCLVMDYCPSGDLHVLRQKQPSKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSFPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSAPYKSRRTKADYQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGESHGSAVDWWTYGIFLFELLYGRTPFKGSANEDTLTNIVSQTLKFPDCPLVSFHARDLIRCLLTKEPENRLGSTKGAVEIKQHPFFEGLNWALIRCATPPELPKFFDGATSTMPVDSGENTKRRDLENIETDAAMFDLF* | 859 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10764787 | 10767787 | - | CsaV3_6G014850.1 | Csa06g01287 | 532914 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01287 | 858 | SMART | serkin_6 | 473 | 805 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01287 | 858 | MobiDBLite | consensus disorder prediction | 402 | 445 | - | - | |
Csa06g01287 | 858 | Pfam | Protein kinase domain | 474 | 623 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01287 | 858 | Pfam | Protein kinase domain | 702 | 805 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01287 | 858 | PANTHER | FLIPPASE KINASE 1-RELATED | 1 | 835 | - | - | |
Csa06g01287 | 858 | Gene3D | Transferase(Phosphotransferase) domain 1 | 700 | 823 | - | - | |
Csa06g01287 | 858 | ProSiteProfiles | Protein kinase domain profile. | 473 | 805 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01287 | 858 | MobiDBLite | consensus disorder prediction | 54 | 74 | - | - | |
Csa06g01287 | 858 | SUPERFAMILY | Protein kinase-like (PK-like) | 451 | 825 | IPR011009 | - | |
Csa06g01287 | 858 | MobiDBLite | consensus disorder prediction | 413 | 445 | - | - | |
Csa06g01287 | 858 | MobiDBLite | consensus disorder prediction | 54 | 72 | - | - | |
Csa06g01287 | 858 | CDD | STKc_phototropin_like | 473 | 828 | - | - | |
Csa06g01287 | 858 | PANTHER | SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 | 1 | 835 | - | - | |
Csa06g01287 | 858 | Gene3D | Phosphorylase Kinase; domain 1 | 472 | 552 | - | - | |
Csa06g01287 | 858 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 594 | 606 | IPR008271 | GO:0004672|GO:0006468 | |
Csa06g01287 | 858 | Gene3D | Transferase(Phosphotransferase) domain 1 | 553 | 621 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g01551 | Csa06g01287 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01287 | Csa-Chr6:10764787 | Csa06g03433 | Csa-Chr6:28317839 | 3.02E-54 | dispersed | |
Csa06g01287 | Csa-Chr6:10764787 | Csa06g01288 | Csa-Chr6:10775950 | 8.47E-138 | tandem | |
Csa07g01557 | Csa-Chr7:15913650 | Csa06g01287 | Csa-Chr6:10764787 | 2.24E-73 | transposed | |
Csa06g01287 | Csa-Chr6:10764787 | Csa06g02664 | Csa-Chr6:23445828 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78351 | PF00069 | Pkinase | 5.00E-37 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01287 | - | - | csv:101206786 | 1644.02 |