Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01288 ATGGAGTCATCTCCAGACGACATCGCCGACGACCTGCAGAGCCTCAGCTTCAACTCAACTAACACCAACCGCAGCACCAGCTCCGGCTCCGAGACTACTCTCACCGCCTCCTCTTCCTCCCTTAACATCCCTTCCATTCTCAGTAAACCTCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTGAACCGGATCCGATCCGAATCTTCGTTTCGCCAACTCGCCTTCTCCGACCTTAAGTTCTTCCACCGCCTCGGCTCAGGTGACATTGGCTCCGTCTACCTCTCCGGTCTCAAGTCTGCTGGAACTGACGGATGCTTGTTTGCAGCGAAGGTAATGGATAAGAAGGAACTGGCGAGTCGGAGTAAAGAAGGAAGAGCGAGGACTGAGAGGGAGATTTTGGAGTCTCTGGACCATCCATTTCTACCAACGCTTTATGCTAGTATCGACTCACCGAAGTGGCTCTGTCTCTTGACTGAGTTTTGTCCCGGCGGCGACCTCCATGTTCTCCGGCAACGGCAACCTAACAAACGATTCCATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTCGCTATCGAATACCTTCACATGATGGGGATTGTTTACCGTGATCTGAAGCCGGAAAATGTGCTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCTTTGAAGTGCGAGGAATCAACAGCGACCCCACAGGTTATCAATGCTAAAAATCCGATGAATGGCACCGCCCCGTTAAAGGACTATCAAATTGATGCCCCTCCTTTCACATCATCCTCTTGCATACTTCCAAACTGTATAGTCCCCGCCGTGTCATGTTTCAACCCAAAACGCAAGCGAAAGAAGAAGTCTGGACATCGCAATGGACCCGAGTTTGTGGCTGAACCAGTTGACGTCCGGTCAATGTCATTTGTCGGCACCCACGAGTACTTGGCACCGGAGATTGTCTCAGGTGAGGGCCATGGAAGCGCAGTGGACTGGTGGACCTTGGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCTTTTAGAGGCATGGACAATGAACTTACCTTGGCCAATATAGTTGCTAGAGCCCTTGAGTTCCCTAAAGAACCAGCAGTGCCAACAGCAGCTAAGGACCTCATCTCTCAGTTGTTGATCAAAGACCCGGCGAGACGGTTGGGATCAACGACAGGGTCATCGGCGATCAAGCACCATTCATTTTTTCAAGGGGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCTCCACCTTTTAGTAGAGAGAAAATTGCATCAGATGAAAGCTGCACAGAAGCCCCAGTGGACTATTATTAG 1356 50.66 MESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSLNIPSILSKPHAPSSDPCWSAVNRIRSESSFRQLAFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFHELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEESTATPQVINAKNPMNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPVDYY* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10775950 10779856 + CsaV3_6G014860.1 Csa06g01288 532915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01288 451 PANTHER FLIPPASE KINASE 1-RELATED 3 451 - -
Csa06g01288 451 PANTHER OS11G0150700 PROTEIN 3 451 - -
Csa06g01288 451 Gene3D Phosphorylase Kinase; domain 1 78 165 - -
Csa06g01288 451 MobiDBLite consensus disorder prediction 9 36 - -
Csa06g01288 451 SUPERFAMILY Protein kinase-like (PK-like) 57 435 IPR011009 -
Csa06g01288 451 ProSiteProfiles Protein kinase domain profile. 79 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01288 451 Gene3D Transferase(Phosphotransferase) domain 1 308 430 - -
Csa06g01288 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Csa06g01288 451 Gene3D Transferase(Phosphotransferase) domain 1 166 241 - -
Csa06g01288 451 Pfam Protein kinase domain 82 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01288 451 Pfam Protein kinase domain 309 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01288 451 MobiDBLite consensus disorder prediction 1 36 - -
Csa06g01288 451 SMART serkin_6 79 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01288 Csa-Chr6:10775950 Csa06g02664 Csa-Chr6:23445828 1.20E-131 dispersed
Csa06g03433 Csa-Chr6:28317839 Csa06g01288 Csa-Chr6:10775950 9.14E-40 dispersed
Csa06g01287 Csa-Chr6:10764787 Csa06g01288 Csa-Chr6:10775950 8.47E-138 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78352 PF00069 Pkinase 3.40E-34 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01288 K08286 - csv:101207262 883.634