Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01291 ATGAGCGGCGAAAGCCGGCGGCGAGGCCGTGCCGAAAAGAGTAGTAGGTCGAAGAAGCAGAGGGTAATTCGGTCAGCTGAGGAGGAGATTGAATCAAAGCTTGGATTTGATCTCTTCTCTGAAGGTGATAAAAGGCTTGGATGGTTGCTTACTTTCGCTCCTTCATCTTTGGAGGATCAGGATACTGGAAAGGTCTATAGTTGTATTGATCTTTATTTTGTGACACAGGATGGGAGCAGTTTCAAGTCAAAATATAAATTTCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAACTGACGTGGAGGCATATTTGAGACGCCGTTATGAAGGTCGGATAGCTGATATTGAGATTTTACAAAAAGAAGACCTTGATCTTAAGAATCATCTTTCAGGATTGCGCAAGACATATTTGAAACTATCATTTGACACTGTTCAAGAATTGATGAACGTGAAGAGTGAACTAGTGCATGTTGTTGAAAACAACTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGTAAAAGGGAACAAAAGCCACAAGATTTTCTAGAATGCATTATTGATCTTCGAGAGTATGACGTTCCTTATCATGTCCGCTTTGCTATTGATCATGATTTACGCTGTGGACAATGGTACGATGTTAGTGTTTCAAGTACTGGTGTTACATTGGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATTGAAACCACAAAGCTACCATTGAAATTCCCAGATGCTGAATATGATATGATAATGATGATTTCCTATATGGTTGATGGAAATGGGTACTTGATTATCAATAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACTCCAAAACCAGAATTTGAAGGGTTCTTTAAAGTCACCAACGTGAAAAATGAGTTAGAGCTTCTCAAACTGTGGTTTTCCCATATGCGAGAGGTGAAACCTGGAATTTATGTCACTTACAATGGTGATTTTTTTGACTGGCCATTCATTGAAACCAGAGCAGCTTATCATGGCTTTAAGATGAGTGATGAAGTAGGATTTCAATGTGACAAGAATCAGGGGGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCTTGGGTAAAGCGTGATAGTTATCTACCTCAGGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCTGAGGATATGGTGCGGTTTGCAATGGAAAAGCCTCAGATGATGGCTTCCTATTCTGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTACGTTCATCCTTTCATATTTTCTTTAGCAACTATTATTCCAATGTCACCAGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTACAGCAACCGGCTTCTTGAAAGTGAGACTTACATTGGTGGTCACGTAGAATGCCTCGAGAGTGGTGTATTTAGATCTGATCTTCCTACCAGTTTTAGGCTTGATCCATCTGCTTATGATCAATTGATAAACAATTTGGATAGAGATCTGCAATATGCCATACAAGTAGAAGGAAAGATGGAATTGGAGTCGGTGTCAAATTATAGCGATGTGAAGAATGCTATCATGGAAAAGCTCATTAGATTGCGGGACGAGCCTGTACGCGAAGAGGGCCCTCTGATATATCACCTTGATGTGGCGGCGATGTATCCTAATATTATTTTAACAAATAGACTTCAGCCATCATCAATAGTCACAGATGAGGTTTGTACTGCTTGTGATTTCAATCGTCCTGGGAAAACTTGCCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCTGAGTTTGTTGATAGTGGTAATGTTCGGTCGTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAGCAAGCAAAGCTCAAAGATCGTTTAAAGAAATACTGTCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATTTGCATGAGAGAAAACTCTTTCTATATCGACACTGTTCGTAGTTTTCGAGATAGAAGGTATGAATACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTAACCGAAGCTAAATCAAGCGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTGGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGAGCACGATGGTATTCGATGGAAATGGCTGGTGTAGTTACATATACAGGAGCGAAAATAATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCACTGGAGTTGGACACTGATGGTATCTGGTGTGCTCTACCTGGATCGTTCCCAGAGAATTTTACCTTCAAAACAAGAGATTCGAAGAAGTTGACGATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAACACGAATGATCAATACCAGACGCTTATAGATCCTGTGAAGAAAACATATAAAACACACAGCGAATGCTCAATTGAATTTGAAGTAGATGGACCATATAAGGCAATGATCCTCCCTGCTTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACACTTGCGGAGCTAAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCAGAACTTTTTGACAAGTTTCTTCATGGTTCCACATTAGAGGAATGCTATTCAGTTGTTGCGTCTGTTGCAAATCGATGGCTTGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCAAGTACCATGAGCAAGTCTTTGGTAGACTACGGGGAACAAAAGTCTTGTGCTGTTACCACTGCCAGACGTCTTGCAGACTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATACATAGTTGCATGTGAACCTAAGGGTACTCCTGTAAGTGAGCGTGCTCTTCCAGTTGCAATCTTTGAGACTGATGCAGAGATAATGAAATTTTATGTACGTAAATGGTGCAAAATTTCATCTGAAGTCGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGCTTAAGCTCAGCAATTCAAAAGATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGAGAGAAGGATGATAAATTTCGGCAACAGAAAGTTGCTGATATGTTTGCATCCTCGAGCAGAGTTAAATATTCAAAGAAGAATAGTGATGTTAGCTGCAGCAAACATGCTGTGGATGAAGATAATTCTGAAGATTTAGAAGATTTTCAAAAGAAAACAAGTTCTACAAATGGCCCCAAACCAGTTGTCCGATGTTATGATGTCAAAGGCAAGAAACATTCACTTACGAGCGATATTGAAACAAACTCCGAAATGCAGGAGAATTTTAATGATGGAGGATTTGAGCCTTCTTCACCCGTGGATGTTGAAAACATAGACAAAAATGTAGATTACAGTGGATGGCTTGAATTGAAGAAGCGAAAATGGAAGGATACTTTAGACAGGAGGAAGAAGCAAAGGTTAGTAAATTCAAGGACTCCACTTGCTGCTAATAATGTTACAAGGGAGTTAAATGGTGCTACAAATAATAAAGATGCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTGTAACTCGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTCCACAGAGTGGCCAATATTTTGCTTGGGCTGTCGTGGAAGGAGTTATGCTAAAGATCCCTATTAATGTTCCTAGAGTTTTTTACCTTAATTCTAAAGCACCTATTACAGATGAATTTGTGGGCAGGCGTGTGAATAAAACTCTTCCCCATGGAAGGCACAGTTATAACCTGTATGAGGTTGTGACTGATGAGGGTCAATTTAGGACACAGAGGAATAAACTTGCAGCCCTACTTGCGGATCCAGAAGTAGAGGGAATCTATGAAAGCAAGGTACCATTAGAGTTCAAGTCCATCTTTCAGATTGGCTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAGCGAAACATTCAAGACGGATGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGAAAAGTCAATCTCTTTCTTCTATGTGTATCATAGCATTTCCGAAGGAAGAGCTATCTTCGTCACCTTTTTTCCCTCCACAAGGTCAATATTTGTGGTCGTGGTTAATCCTTACCAGAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATTTCGTGAAGCTTCTCAAATGCTGTCTGGTGAATCACAACCTCCTAAGAGTGGTATAACTTACAAGGTAGACTATGTTGTTAACATCAAAGAAGCTGAAGTGATTTTGCAAAGATCAATAACAGAACACAGGAGCTTAAACCATGGACCTACTCTAGCTGTAATTCAATGCCCAAGTGTACAACGGCTGAAGTCAGGTGTGAGAGTATTAGATGATTTTCCATGTGTGACCATCCCTTCTAATGCTCGTGATAACCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGCTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCAAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGTTAATTTTTACGGCAGATATATTTTTTTCAAGAGCATTACATGATCAACAACAGGTACTTTGGATATCCGATGATGGTGTTCCAGACATAGGAGGCATTAACATAGAAGATGTGTGTTTCGCTGATGAGGTCCAACAACCTATTCTGACGTACCCTGGAGCATATAGAAAAGTTTCTGTGGAGTTTAAGATCCATCATTTGGCTGTCAATGCTCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGCAGTTTGTTTGGCTTTGAACGTGATATTCAATGTGGGGCTCAATTTTCTAATGAAGAAGGTGGCTTTGATGAGGCTGCTTCATGTGCTCCGGCATTTCGTGTCCTGAAACAATTGATACAAAGGTGTCTTACAGATGCAGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCAGCATCTGTACAGATGGATTTGCAGCCCCCAGTCAAAACTTCACGACCCAGCTCTTCATCGTTTGTTCCACAAGGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAGCTACGCAAATTAGGCGCCACCATTATATTTTCAAACTTCTCAAGAATTATTATAGACACGGGAAGGTTTGATCTCTCTTCTGCCAAAGCATACTGTGATAGCTTGCTGAAAACAGTGAAAACAAGGGATCTGTTCGAGTGGATTGAGCTGGAACCATTACAGTTCTGGCAGTCCCTGTTGTTTATGGATAAGTATAACTATGGTGGAATCCGGGCAAAAGATGATGAGAGCACAGATGTTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCCGAGTATCTGCCCAAGAAGATTCAGGATCACTTTGATTTTATCATCTCCCAGTTTTTGTATATTCCATGGGATTATGCAACCAAGCAAGCTGCAGCAAGAGCATCATTGCAGCGTGATGACACATGTACCCCATCCATTACTGTTTTAGCTGCTGAATCATTTGAATCACATGTGACAGAACATCTGAAAGAACAGCTAAGCTCTTACTTCAGTGACAAAATGTTGGGAATTGTTCGGGATATTGTTCTTCATATGAAAGGGAAGGAGAAGAACACCCAGGATGGTTTGCCAGAACAACCTCCTGGTAATATCTACAAAGGAGATGCTGCTTTGGAATTCATTAAGCTCGTCTGCTCTGTTTTGGCAATTGATCAAAATGTCCAGCATGACGTTCTGGTAATGAGGAAAAATTTACTGAAGTTCGTGCGTGTAAGAGAGTTTGCCCCCGAAGCTGAGTTTTCTAATTCCAGCCCGTCCATAATCTTGCCCAACGTTATTTGCAGCTATTGCGACGATTGTCGAGATCTGGACTTGTGCCGCGACTCAGCTTTACTAGCACAGGAATGGCGCTGTGCTGTGCCACAATGTGGACAACCGTATGACCAAGAAGAGATGGAGAATAAGCTGCTTCAAATCGTGCGACAGAGGGAGCGTCTCTATCACGTGCAGGATCTGGTATGCATTCGTTGCAAACAAGTCAAAGCAGCTCATTTATCGGAACAATGTAGCTGTGCCGGTTCATTTAAATGCAAAGAAGATGCGGCAGAATATTTCAGCAAGATGCTTGTTCTTCTTAATGTAGCCACTCGTCAGAAGTTTCAACTACTGCAAGAGTTCACCACGTGGATCTTAGAAAACTCATGA 6621 40.66 MSGESRRRGRAEKSSRSKKQRVIRSAEEEIESKLGFDLFSEGDKRLGWLLTFAPSSLEDQDTGKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEAYLRRRYEGRIADIEILQKEDLDLKNHLSGLRKTYLKLSFDTVQELMNVKSELVHVVENNWAKSDAAEAYDSILFGKREQKPQDFLECIIDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGNGYLIINRECVGEDIENLEYTPKPEFEGFFKVTNVKNELELLKLWFSHMREVKPGIYVTYNGDFFDWPFIETRAAYHGFKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAMEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFYSNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLINNLDRDLQYAIQVEGKMELESVSNYSDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPSSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDSGNVRSSKSFLELPKLEQQAKLKDRLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLTEAKSSGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTRDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKTYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLVDYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERALPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSSRVKYSKKNSDVSCSKHAVDEDNSEDLEDFQKKTSSTNGPKPVVRCYDVKGKKHSLTSDIETNSEMQENFNDGGFEPSSPVDVENIDKNVDYSGWLELKKRKWKDTLDRRKKQRLVNSRTPLAANNVTRELNGATNNKDAPRTGVGSYFKRHEGSVTRCHWQILQLVHSPQSGQYFAWAVVEGVMLKIPINVPRVFYLNSKAPITDEFVGRRVNKTLPHGRHSYNLYEVVTDEGQFRTQRNKLAALLADPEVEGIYESKVPLEFKSIFQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKSISFFYVYHSISEGRAIFVTFFPSTRSIFVVVVNPYQNKDLSSTFLERQFREASQMLSGESQPPKSGITYKVDYVVNIKEAEVILQRSITEHRSLNHGPTLAVIQCPSVQRLKSGVRVLDDFPCVTIPSNARDNQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINIEDVCFADEVQQPILTYPGAYRKVSVEFKIHHLAVNALLKSNQVNEMEGGSLFGFERDIQCGAQFSNEEGGFDEAASCAPAFRVLKQLIQRCLTDAVTSGNVYADAILQHLYRWICSPQSKLHDPALHRLFHKVMQKVFALLLAELRKLGATIIFSNFSRIIIDTGRFDLSSAKAYCDSLLKTVKTRDLFEWIELEPLQFWQSLLFMDKYNYGGIRAKDDESTDVESQVDIVANWNIAEYLPKKIQDHFDFIISQFLYIPWDYATKQAAARASLQRDDTCTPSITVLAAESFESHVTEHLKEQLSSYFSDKMLGIVRDIVLHMKGKEKNTQDGLPEQPPGNIYKGDAALEFIKLVCSVLAIDQNVQHDVLVMRKNLLKFVRVREFAPEAEFSNSSPSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCGQPYDQEEMENKLLQIVRQRERLYHVQDLVCIRCKQVKAAHLSEQCSCAGSFKCKEDAAEYFSKMLVLLNVATRQKFQLLQEFTTWILENS* 2207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10784000 10817806 + CsaV3_6G014890.1 Csa06g01291 532918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01291 2206 SMART DUF1744_2 1511 1896 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Csa06g01291 2206 Gene3D - 941 1125 IPR042087 -
Csa06g01291 2206 Pfam DNA polymerase family B, exonuclease domain 75 401 IPR006133 -
Csa06g01291 2206 SUPERFAMILY Ribonuclease H-like 67 468 IPR012337 -
Csa06g01291 2206 Pfam DNA polymerase family B 754 1070 IPR006134 GO:0000166|GO:0003677
Csa06g01291 2206 MobiDBLite consensus disorder prediction 1182 1201 - -
Csa06g01291 2206 MobiDBLite consensus disorder prediction 1 24 - -
Csa06g01291 2206 Gene3D Palm domain of DNA polymerase 751 937 IPR023211 -
Csa06g01291 2206 Gene3D - 239 469 IPR036397 GO:0003676
Csa06g01291 2206 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa06g01291 2206 CDD DNA_polB_epsilon_exo 241 445 - -
Csa06g01291 2206 CDD POLBc_epsilon 504 1122 - -
Csa06g01291 2206 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Csa06g01291 2206 Pfam Domain of unknown function (DUF1744) 1519 1896 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Csa06g01291 2206 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 31 2203 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Csa06g01291 2206 Gene3D DNA Polymerase, chain B, domain 1 57 234 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01291 K02324 - csv:101208568 4431.71