Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01300 ATGGAGAGCCAAAGAGTACTTGAAGAAACTTGTTCTGTTTATGGAATCAACAACAATATTAATCTTTCTTCAACTTTGATCAATAATCATGATGGGCAATCTTTTGACTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGCGCGATGAATAAACTCGATCATTACGAACCTAAACAAAGCTTTTTGTCAGGGAAGCCTGCAGCAACACTGGAAATGTTCCCTTCTTGGCCAATCAAATACCAACAAACTTCAAGAGGAGTTAGTTTGAGAAAAAGAGAAGAGATGCTGAGAGGATCAGGTAATTACAATAACAGTAACGAAGAAAAGGAAATGGAAATATTGGGTAAAGATGAAGAGGATGAAGAAGAAAGTGAAATGAGTAATTGTTCAGCTCCTCAACAACAACAACAACAACATGAACATAACTATAACACCTCCTGCTTTAATATTATTAACAATATTCAACCTCATCAAGTTCTTATGGTCAGTACTGATGTTTCAACAACTGCACTTTCATCTCAACATCAGTACTCTCTTCAACAAAAGAGAAAAGGATGTGGTTCAATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAAAACAGAGAGGCAGCGAGGAAGAGTCGACTAAGGAAGAAGGCTTACGTACAGCAACTTGAGAGTAGTAGAATTAAGCTTACACAGCTTGAACAAGACTTTCAACGTGCACGTTCTCAGGGTATTGGCGGCGGCAATGGCAATGGCAATGTCAACCATGGGAGTGGTGCATTGTGGTTTGATATGGAATATGTGAGGTGGTTGGAAGAGGAGCATCGACACACAATGGAGTTGCGTGGGGGCTTAGAGGCACATTTATCGGACACAGAGTTGAAAGTGAGGGTTGATGCGTGCATTTATCATTACGATCAATTTTTTCGATTGAAAAGCGAGGCTGCTAAGTTTGACATCTTCCATCTCATCACTGGGATGTGGATGTCTCCTGCTGAGCGTTGTTTCCTTTGGATTGGTGGATTTCGACCATCTGATCTCATCAAGATGTTAATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAAATTTATAAACTACAAAATTCCTCACAACAGGCTGAAGATGCTTTATCTCAAGGCCTTGATCAGCTCCATCAGTCTTTGATCGACACCGTCGCCGGCAGTCCGATTGTCGATGGAGGAATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCATGGCTTTCTCCATCAGATATTTTAA 1296 40.82 MESQRVLEETCSVYGINNNINLSSTLINNHDGQSFDFGELEQAIVLQGLGAMNKLDHYEPKQSFLSGKPAATLEMFPSWPIKYQQTSRGVSLRKREEMLRGSGNYNNSNEEKEMEILGKDEEDEEESEMSNCSAPQQQQQQHEHNYNTSCFNIINNIQPHQVLMVSTDVSTTALSSQHQYSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDFQRARSQGIGGGNGNGNVNHGSGALWFDMEYVRWLEEEHRHTMELRGGLEAHLSDTELKVRVDACIYHYDQFFRLKSEAAKFDIFHLITGMWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQNSSQQAEDALSQGLDQLHQSLIDTVAGSPIVDGGINHMVLAMDKLSSLHGFLHQIF* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10879380 10885618 + CsaV3_6G014980.1 Csa06g01300 532927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01300 431 Gene3D - 201 249 - -
Csa06g01300 431 Coils Coil 221 248 - -
Csa06g01300 431 MobiDBLite consensus disorder prediction 99 144 - -
Csa06g01300 431 Pfam bZIP transcription factor 201 236 IPR004827 GO:0003700|GO:0006355
Csa06g01300 431 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 205 220 IPR004827 GO:0003700|GO:0006355
Csa06g01300 431 SMART brlzneu 198 256 IPR004827 GO:0003700|GO:0006355
Csa06g01300 431 SUPERFAMILY Leucine zipper domain 202 242 IPR046347 GO:0003700|GO:0006355
Csa06g01300 431 Pfam Seed dormancy control 283 358 IPR025422 GO:0006351|GO:0043565
Csa06g01300 431 PANTHER TRANSCRIPTION FACTOR TGA9 61 429 - -
Csa06g01300 431 PANTHER TRANSCRIPTION FACTOR TGA9 61 429 - -
Csa06g01300 431 MobiDBLite consensus disorder prediction 130 144 - -
Csa06g01300 431 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 200 244 IPR004827 GO:0003700|GO:0006355
Csa06g01300 431 ProSiteProfiles DOG1 domain profile. 265 431 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01468 Csa-Chr1:10392842 Csa06g01300 Csa-Chr6:10879380 2.00E-129 dispersed
Csa06g01300 Csa-Chr6:10879380 Csa06g02195 Csa-Chr6:19810153 2.03E-90 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32004 PF14144 DOG1 3.50E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01300 K14431 - csv:101223216 816.224