Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01318 ATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGCCCCATCCAATGCTTCTTCTTGGTGGTCTTCTGATTTTGAGGACAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAATGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTCTCGCCTCAGACAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCTATTCCAGATGGGTTCTATTCTGTTATTCTGGATAAAAGGCTAAAAGACCGGTTTCACAGCATTCCTTCCCTGGACGAGCTTCGTGCTTTGGAGGTGGAAGGTTACAGGAATGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAATTCAAATCCAGCTGCAATTATCAAGAAGATCGCTGGACTGGTTTCTGATTTTTATAAACGACCAATCTTAGAAAGTCCAGCAAAAGGTGCTCTTGAAGAAACCTCACACTTGTTCGAGGATAGAGGCATTCAATTGCTTGGACAAATAAAATTTGGTTCTTGTCGTCCTAGAGCTATCTTATTTAAGGCTCTGGCAGACACCGTAGGGCTTGAAAGCCGGCTCATGGTGGGCTTGCCAAATGAGGGGGCTACTGGGTGTGTAGATTCATACAAGCATATGTCTGTGACAGTTGTATTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGGTTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCCATTTTTATGACACATATTTCCGCTGCTGGTGAAAGCGATTCTGCTGAAAACGACTCCTGTGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGTCGAGAAAGATGAGAGCCTCCAATTCCACAGAAAATTTGATGCAACTTCAAATGCACATGGTAATTCATTGCGCAACATGATGTTGCGATCAAGTACAGCACTTGACAGAAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCACGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGACGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGGACAAGAAGATGACAGGTCGTTCTCCCATCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCGGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCATTACCATCATCGCCTCACGTGTACAGGGGTCAAACCTCTGATGGAATTGGGCATTCAGCATACGGGAATGATGAATTAACCTTTAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGTATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTCCGTGGAATTTGGAATGGAACAGATGTCGCAATCAAAGTTTTCCTAGAACAAGATTTAACTCCTGAGAACATTGAGGACTTTTGTAATGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCTTGTATTCCTTGATTCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGGAGGAGATTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGAGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACCGTTAAGATATGCGATTTTGGGCTTTCAAGAATATTGACAGATGCTCCAGCTAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAGCCCTTCACTGAAAAGTGTGATATCTTCAGTCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAACAGACCATGGGAGGGTGTCCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGGTCCCGCCTCGAGATTCCCGAAGGGCCACTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATCCTCTCACGCTTGCTGGACTGCGAGTACTCACTTTCTTGA 2400 43.79 MEDQRDDVAPSEQAPSNASSWWSSDFEDKFGSVSLGPREDIVNEKEEIINSDQDVLFSPQTASQILWRTGMLCEPIPDGFYSVILDKRLKDRFHSIPSLDELRALEVEGYRNDVILVETEKDKKLSMLKQLILTLVKGLNSNPAAIIKKIAGLVSDFYKRPILESPAKGALEETSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGATGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSVEKDESLQFHRKFDATSNAHGNSLRNMMLRSSTALDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGQEDDRSFSHPSNERNSSSDVRRNDQVGSQRAISLPSSPHVYRGQTSDGIGHSAYGNDELTFKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS* 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11010803 11019504 - CsaV3_6G015160.1 Csa06g01318 532945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01318 799 MobiDBLite consensus disorder prediction 10 24 - -
Csa06g01318 799 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 30 797 - -
Csa06g01318 799 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 797 - -
Csa06g01318 799 SUPERFAMILY Protein kinase-like (PK-like) 520 791 IPR011009 -
Csa06g01318 799 MobiDBLite consensus disorder prediction 449 473 - -
Csa06g01318 799 MobiDBLite consensus disorder prediction 474 496 - -
Csa06g01318 799 Gene3D Phosphorylase Kinase; domain 1 536 621 - -
Csa06g01318 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Csa06g01318 799 ProSiteProfiles Protein kinase domain profile. 543 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01318 799 CDD STKc_MAP3K-like 549 791 - -
Csa06g01318 799 MobiDBLite consensus disorder prediction 447 501 - -
Csa06g01318 799 ProSitePatterns Protein kinases ATP-binding region signature. 549 570 IPR017441 GO:0005524
Csa06g01318 799 Pfam Ethylene-responsive protein kinase Le-CTR1 60 255 - -
Csa06g01318 799 MobiDBLite consensus disorder prediction 363 420 - -
Csa06g01318 799 MobiDBLite consensus disorder prediction 385 402 - -
Csa06g01318 799 MobiDBLite consensus disorder prediction 1 24 - -
Csa06g01318 799 Gene3D Transferase(Phosphotransferase) domain 1 622 798 - -
Csa06g01318 799 Pfam Protein tyrosine and serine/threonine kinase 544 791 IPR001245 GO:0004672|GO:0006468
Csa06g01318 799 SMART serkin_6 543 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01318 Csa-Chr6:11010803 Csa06g02656 Csa-Chr6:23385603 2.31E-74 dispersed
Csa06g01318 Csa-Chr6:11010803 Csa03g03375 Csa-Chr3:30479921 2.21E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78353 PF07714 PK_Tyr_Ser-Thr 4.40E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01318 - - csv:101220859 1600.1