Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01343 ATGAAATTCGAAGAGCCGAACCAGAATCATCATCAGTCCAAACAGATATGCAGAACCATTCAAGTGGATACAATTGATCACCATCACACTATTTCCTCGCTACTTGCAATGGAGGCTTCCGAATTCTGCGATAAGGATGGTGATGATGGCCTCTATACCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGTTTCCCTGACTCTCCTAACTTCTCCTTCCTTCAAACCCTAGCTCTCCGTTCCATTATATGTTTATGTCCGGAGCCATATCCGGAACACAACATGGACTTCCTCAAGTCTAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCTGTAAGGAGCCTTTTGTGAACATCCCAGACGATATTATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCACTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGCTGTCTTGTGGGATGCCTGAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTGTTCGATGAGTATCAGAGATTTGCAGCTGCGAAAGCAAGAATTTCTGACCAGAGGTTTATGGAGTTGTTTGATATCTCTGACTTGAAGCATCTTCCCATGTCGTTCTCATGCTCAAAGAGGTGA 645 44.03 MKFEEPNQNHHQSKQICRTIQVDTIDHHHTISSLLAMEASEFCDKDGDDGLYTPPLNFSMVDNGIFRSGFPDSPNFSFLQTLALRSIICLCPEPYPEHNMDFLKSNGIRLFQFGIESCKEPFVNIPDDIIREALKVVLDDRNHPLLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSCSKR* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11293158 11298412 - CsaV3_6G015410.1 Csa06g01343 532970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01343 214 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Csa06g01343 214 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Csa06g01343 214 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Csa06g01343 214 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
Csa06g01343 214 Gene3D Protein tyrosine phosphatase superfamily 52 201 IPR029021 -
Csa06g01343 214 CDD PFA-DSP_Siw14 51 198 - -
Csa06g01343 214 Pfam Tyrosine phosphatase family 53 203 IPR004861 -
Csa06g01343 214 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 212 - -
Csa06g01343 214 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 211 IPR020422 GO:0006470|GO:0008138
Csa06g01343 214 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Csa06g01343 214 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 199 IPR029021 -
Csa06g01343 214 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 4 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03339 Csa-Chr1:29942734 Csa06g01343 Csa-Chr6:11293158 2.38E-78 transposed
Csa06g01343 Csa-Chr6:11293158 Csa06g02393 Csa-Chr6:21388398 1.97E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01343 K18045 - csv:101222170 449.129