Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01375 ATGGTGAAGTTTACAGCAGAAGAGCTCCGTCGGATTATGGACTATAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTAGATCATGGGAAGTCGACACTTACAGATTCTCTTGTGGCTGCTGCGGGTATCATCGCACAAGAAGTTGCCGGTGATGTACGAATGACAGATACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACATGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCGTCGGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCTCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACGTATGAGGATCCACTTCTGGGCGATGTTCAAGTGTACCCGGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGCTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGGCGAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACGAAGAAGTGGACAAGCAAGAACACTGGCACGGCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCGGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGTGTTGTCATGAAGTCTGATGAGAAGGATCTGATGGGCAAACCACTGATGAAGCGGGTCATGCAAACATGGCTACCAGCAAGTACTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCAAGGCTCAAAAGTATCGTGTGGAGAATTTGTATGAGGGTCCACAAGATGATGTTTACGCTAGTGCCATTAGAAATTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCAGCATCTGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTGTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGCCCCAACTATGTTCCTGGTGAGAAAAAAGATTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGGCTGGATCAATTTATCACTAAGAATGCCACTCTGACAAATGAAAAGGAAGTCGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTATCTCCCGTCGTGCGTGTTGCCGTTCAGTGCAAGGTGGCCTCTGATCTTCCCAAGCTTGTGGAAGGACTTAAACGTCTGGCCAAGTCAGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGCGCTGGAGAACTACATCTTGAGATCTGTTTGAAGGATTTGCAAGATGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTACTTGAGAGGTCATGCCGCACAGTGATGAGCAAGTCCCCTAACAAGCACAATCGACTGTACATGGAAGCACGACCCATGGAGGATGGACTGGCAGAGGCTATTGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTAGGTCTAAAATTTTGTCAGAGGAGTTTGCTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCGGAAGAGAACATGAGAGGCATCTGTTTTGAACTGACTGCCAAACCAAGACTTCTTGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCGGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAATCAAAAGCGTGGGCATGTCTTTGAGGAAATGCAGAGGCCTGGCACACCTCTTTACAACATCAAGGCATATCTCCCCGTCATCGAATCATTTGGGTTCTCGAGCACTTTGAGAGCTGCAACTTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGAAATGATGTCTTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGGTTGAAGGAGCAAATGACCCCACTTTCCGATTTCGAGGACAAGCTGTAG 2442 46.48 MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERHGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGTATCKRGFVQFCYEPIKQIIATCMNDRKDKLWPMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPQDDVYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGRIGPRDDPKVRSKILSEEFAWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFELTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWEMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11678326 11681398 + CsaV3_6G015730.1 Csa06g01375 533002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01375 813 SMART EFG_C_a 694 783 IPR000640 -
Csa06g01375 813 Gene3D - 3 237 IPR027417 -
Csa06g01375 813 SUPERFAMILY Translation proteins 342 476 IPR009000 -
Csa06g01375 813 PANTHER - 689 812 - -
Csa06g01375 813 SUPERFAMILY Ribosomal protein S5 domain 2-like 562 691 IPR020568 -
Csa06g01375 813 SMART EFG_IV_2 606 711 IPR005517 GO:0005525
Csa06g01375 813 Gene3D Elongation Factor G (Translational Gtpase), domain 3 486 563 - -
Csa06g01375 813 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 CDD eEF2_snRNP_like_C 697 775 - -
Csa06g01375 813 Pfam Elongation factor Tu GTP binding domain 17 342 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 Pfam Elongation factor G C-terminus 694 781 IPR000640 -
Csa06g01375 813 SUPERFAMILY EF-G C-terminal domain-like 697 807 IPR035647 -
Csa06g01375 813 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 344 IPR000795 GO:0003924|GO:0005525
Csa06g01375 813 PANTHER - 1 689 - -
Csa06g01375 813 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Csa06g01375 813 CDD EF2 20 230 - -
Csa06g01375 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
Csa06g01375 813 CDD EF2_snRNP_III 487 559 - -
Csa06g01375 813 CDD aeEF2_snRNP_like_IV 559 701 - -
Csa06g01375 813 Pfam Elongation factor Tu domain 2 394 467 IPR004161 GO:0005525
Csa06g01375 813 CDD EF2_II 375 470 - -
Csa06g01375 813 Pfam Elongation Factor G, domain III 487 549 IPR041095 -
Csa06g01375 813 TIGRFAM small_GTP: small GTP-binding protein domain 20 176 IPR005225 GO:0005525
Csa06g01375 813 SUPERFAMILY EF-G C-terminal domain-like 484 560 IPR035647 -
Csa06g01375 813 Pfam Elongation factor G, domain IV 611 690 IPR005517 GO:0005525
Csa06g01375 813 Gene3D - 570 693 IPR014721 -
Csa06g01375 813 Gene3D - 694 813 - -
Csa06g01375 813 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 689 - -
Csa06g01375 813 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 689 812 - -
Csa06g01375 813 Gene3D Translation factors 343 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01375 Csa-Chr6:11678326 Csa07g01078 Csa-Chr7:10347641 3.22E-134 dispersed
Csa06g01375 Csa-Chr6:11678326 Csa06g01377 Csa-Chr6:11732331 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01375 K03234 - csv:101208886 1617.05