Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01375 | ATGGTGAAGTTTACAGCAGAAGAGCTCCGTCGGATTATGGACTATAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTAGATCATGGGAAGTCGACACTTACAGATTCTCTTGTGGCTGCTGCGGGTATCATCGCACAAGAAGTTGCCGGTGATGTACGAATGACAGATACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACATGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCGTCGGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCTCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACGTATGAGGATCCACTTCTGGGCGATGTTCAAGTGTACCCGGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGCTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGGCGAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACGAAGAAGTGGACAAGCAAGAACACTGGCACGGCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCGGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGTGTTGTCATGAAGTCTGATGAGAAGGATCTGATGGGCAAACCACTGATGAAGCGGGTCATGCAAACATGGCTACCAGCAAGTACTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCAAGGCTCAAAAGTATCGTGTGGAGAATTTGTATGAGGGTCCACAAGATGATGTTTACGCTAGTGCCATTAGAAATTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCAGCATCTGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTGTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGCCCCAACTATGTTCCTGGTGAGAAAAAAGATTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGGCTGGATCAATTTATCACTAAGAATGCCACTCTGACAAATGAAAAGGAAGTCGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTATCTCCCGTCGTGCGTGTTGCCGTTCAGTGCAAGGTGGCCTCTGATCTTCCCAAGCTTGTGGAAGGACTTAAACGTCTGGCCAAGTCAGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGCGCTGGAGAACTACATCTTGAGATCTGTTTGAAGGATTTGCAAGATGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTACTTGAGAGGTCATGCCGCACAGTGATGAGCAAGTCCCCTAACAAGCACAATCGACTGTACATGGAAGCACGACCCATGGAGGATGGACTGGCAGAGGCTATTGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTAGGTCTAAAATTTTGTCAGAGGAGTTTGCTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCGGAAGAGAACATGAGAGGCATCTGTTTTGAACTGACTGCCAAACCAAGACTTCTTGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCGGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAATCAAAAGCGTGGGCATGTCTTTGAGGAAATGCAGAGGCCTGGCACACCTCTTTACAACATCAAGGCATATCTCCCCGTCATCGAATCATTTGGGTTCTCGAGCACTTTGAGAGCTGCAACTTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGAAATGATGTCTTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGGTTGAAGGAGCAAATGACCCCACTTTCCGATTTCGAGGACAAGCTGTAG | 2442 | 46.48 | MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERHGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGTATCKRGFVQFCYEPIKQIIATCMNDRKDKLWPMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPQDDVYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGRIGPRDDPKVRSKILSEEFAWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFELTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWEMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL* | 814 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11678326 | 11681398 | + | CsaV3_6G015730.1 | Csa06g01375 | 533002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01375 | 813 | SMART | EFG_C_a | 694 | 783 | IPR000640 | - | |
Csa06g01375 | 813 | Gene3D | - | 3 | 237 | IPR027417 | - | |
Csa06g01375 | 813 | SUPERFAMILY | Translation proteins | 342 | 476 | IPR009000 | - | |
Csa06g01375 | 813 | PANTHER | - | 689 | 812 | - | - | |
Csa06g01375 | 813 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 562 | 691 | IPR020568 | - | |
Csa06g01375 | 813 | SMART | EFG_IV_2 | 606 | 711 | IPR005517 | GO:0005525 | |
Csa06g01375 | 813 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 486 | 563 | - | - | |
Csa06g01375 | 813 | PRINTS | GTP-binding elongation factor signature | 101 | 111 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | PRINTS | GTP-binding elongation factor signature | 21 | 34 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | PRINTS | GTP-binding elongation factor signature | 117 | 128 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | PRINTS | GTP-binding elongation factor signature | 65 | 73 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | PRINTS | GTP-binding elongation factor signature | 153 | 162 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | CDD | eEF2_snRNP_like_C | 697 | 775 | - | - | |
Csa06g01375 | 813 | Pfam | Elongation factor Tu GTP binding domain | 17 | 342 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | Pfam | Elongation factor G C-terminus | 694 | 781 | IPR000640 | - | |
Csa06g01375 | 813 | SUPERFAMILY | EF-G C-terminal domain-like | 697 | 807 | IPR035647 | - | |
Csa06g01375 | 813 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 17 | 344 | IPR000795 | GO:0003924|GO:0005525 | |
Csa06g01375 | 813 | PANTHER | - | 1 | 689 | - | - | |
Csa06g01375 | 813 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 58 | 73 | IPR031157 | - | |
Csa06g01375 | 813 | CDD | EF2 | 20 | 230 | - | - | |
Csa06g01375 | 813 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 341 | IPR027417 | - | |
Csa06g01375 | 813 | CDD | EF2_snRNP_III | 487 | 559 | - | - | |
Csa06g01375 | 813 | CDD | aeEF2_snRNP_like_IV | 559 | 701 | - | - | |
Csa06g01375 | 813 | Pfam | Elongation factor Tu domain 2 | 394 | 467 | IPR004161 | GO:0005525 | |
Csa06g01375 | 813 | CDD | EF2_II | 375 | 470 | - | - | |
Csa06g01375 | 813 | Pfam | Elongation Factor G, domain III | 487 | 549 | IPR041095 | - | |
Csa06g01375 | 813 | TIGRFAM | small_GTP: small GTP-binding protein domain | 20 | 176 | IPR005225 | GO:0005525 | |
Csa06g01375 | 813 | SUPERFAMILY | EF-G C-terminal domain-like | 484 | 560 | IPR035647 | - | |
Csa06g01375 | 813 | Pfam | Elongation factor G, domain IV | 611 | 690 | IPR005517 | GO:0005525 | |
Csa06g01375 | 813 | Gene3D | - | 570 | 693 | IPR014721 | - | |
Csa06g01375 | 813 | Gene3D | - | 694 | 813 | - | - | |
Csa06g01375 | 813 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 1 | 689 | - | - | |
Csa06g01375 | 813 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 689 | 812 | - | - | |
Csa06g01375 | 813 | Gene3D | Translation factors | 343 | 484 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01375 | Csa-Chr6:11678326 | Csa07g01078 | Csa-Chr7:10347641 | 3.22E-134 | dispersed | |
Csa06g01375 | Csa-Chr6:11678326 | Csa06g01377 | Csa-Chr6:11732331 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01375 | K03234 | - | csv:101208886 | 1617.05 |