Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01376 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCCTCCCTCAACCCAGAACGTGAAGATTCGCATGTGGTTACGGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAAGGAGCTACTGGACTCCGCTGCGGATGTAAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGCCCGGATGTCGTTGAATTGCTACTTGAAAGGGGTGCGGAGGTTGATGTTCAGGACCAATGGGGTAGTACGCCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAATCTCTTAGAGAAGCATGGTGCAAAGCTGCCGATGGCACCAATGCTTGTGCAAAATGCTCGTGAAGTTCCGGAATATGAAATCAATCCAAATGAGCTTGATTTTTCTAATAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAACTTTTCACCGATGAAGATAAAGTGAAGGCATTTAGGGACGAACTTGGTTTACTTCAGAAGATACGCCATCCTAATGTTGTCCAATTTCTGGGAGCTGTTACACAAAGTAGTCCAATGATGATCGTCACAGAGTATTTGCCCCAGGGTGATCTTCATGCATTCTTGAAACGTAAAGGTTTCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGGATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCAAATAGAGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCTTGAAACTTCATGGCGATATGCTGCGCCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATCGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTACCCAAAGCTTATATAGCCAACGAGCGCCCACTATTTATGGCTCCACCAAATCGTTATGCATTTGGAATACAAGAGCTAATTCAGGAATGTTGGGATGAGAAGCCGCAAAAAAGACCCACATTTCGGCAAATAATAAGAAGGTTAGAGGATATTAACACTCGACTCATGCAAACAAGAAGCTTGAAGGTGAATCCATTTTGCAGTTGTTTTCAGAATCTGAAAGCCTTATTTACAAGCGAAAGAACTAATCCAGGCAGCAGATCTTCTTACTCGGAAAGCAAATGA 1386 42.64 MDANVRARFTLGKQSSLNPEREDSHVVTDELDDSIAIDPGIKLMYLANDGDLDGIKELLDSAADVNFHDTDGRTSLHVAACQGRPDVVELLLERGAEVDVQDQWGSTPLADAIYYKNHDVINLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSNSVNITKGTFRSASWRGIQVAVKTLGEELFTDEDKVKAFRDELGLLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGFLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCLETSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVPKAYIANERPLFMAPPNRYAFGIQELIQECWDEKPQKRPTFRQIIRRLEDINTRLMQTRSLKVNPFCSCFQNLKALFTSERTNPGSRSSYSESK* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11696391 11711901 + CsaV3_6G015740.1 Csa06g01376 533003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01376 461 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Csa06g01376 461 CDD STKc_MAP3K-like 162 415 - -
Csa06g01376 461 PIRSF ILK 2 438 - -
Csa06g01376 461 ProSiteProfiles Protein kinase domain profile. 156 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01376 461 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Csa06g01376 461 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Csa06g01376 461 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 9 439 - -
Csa06g01376 461 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 439 - -
Csa06g01376 461 Pfam Protein tyrosine and serine/threonine kinase 161 415 IPR001245 GO:0004672|GO:0006468
Csa06g01376 461 SUPERFAMILY Ankyrin repeat 42 133 IPR036770 -
Csa06g01376 461 Gene3D - 33 143 IPR036770 -
Csa06g01376 461 SMART ANK_2a 71 100 IPR002110 GO:0005515
Csa06g01376 461 SMART ANK_2a 104 133 IPR002110 GO:0005515
Csa06g01376 461 SMART ANK_2a 39 67 IPR002110 GO:0005515
Csa06g01376 461 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Csa06g01376 461 SUPERFAMILY Protein kinase-like (PK-like) 173 446 IPR011009 -
Csa06g01376 461 Gene3D Transferase(Phosphotransferase) domain 1 232 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02286 Csa-Chr1:20011245 Csa06g01376 Csa-Chr6:11696391 0 dispersed
Csa01g03031 Csa-Chr1:26424222 Csa06g01376 Csa-Chr6:11696391 1.67E-08 dispersed
Csa05g02484 Csa-Chr5:26553717 Csa06g01376 Csa-Chr6:11696391 1.43E-105 dispersed
Csa06g01376 Csa-Chr6:11696391 Csa07g00501 Csa-Chr7:3598934 1.55E-136 dispersed
Csa06g01376 Csa-Chr6:11696391 Csa06g03735 Csa-Chr6:29804365 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78355 PF07714 PK_Tyr_Ser-Thr 5.90E-58 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01376 - - csv:101218932 928.702