Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01379 ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTTAAAAAAGCTTATGAGCTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTACTCGTGGTCGTCTCTACGAATACGCAAATAATAGTGTTAGAGGAACGATTGAGAGGTACAAGAAAGCATTTGCTGATTCTTCCAATTCCGGATTATCAGTTGCCGAAGCTAATGTACAGTTTTACCAACAAGAAGCCACCAAGTTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATCCTGGGAGAAGCACTCAGCTCATTGCCATTAAAAGAGCTCAAAAGTCTTGAGGGCAGATTGGAGAGAGGTATCAGCAAAGTTAGGGCTAAAAAGAACGAAACCTTGTTTGCAGAAATGGAATTCATGCAAAAAAGGGAAATGGAACTTCAGAGCCACAATAACTATCTGAGAACACAGATTGCAGAACACGAAAGAATACAACAGCAGCAGCAGCAACAACAGCAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATATGATGATGAGAATAGAAGTACTTATGGGGCTGTAGGGGCGCTTATGGATTCAGACAGCCATTATGCTCCTCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA 711 41.21 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEATKLKRQIREIQNSNRHILGEALSSLPLKELKSLEGRLERGISKVRAKKNETLFAEMEFMQKREMELQSHNNYLRTQIAEHERIQQQQQQQQQTNMMQRATYESVGGQYDDENRSTYGAVGALMDSDSHYAPQDHLTALQLV* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11768855 11777768 + CsaV3_6G015770.1 Csa06g01379 533006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01379 236 PANTHER MADS BOX PROTEIN 1 228 - -
Csa06g01379 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g01379 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Csa06g01379 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Csa06g01379 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g01379 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 228 - -
Csa06g01379 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Csa06g01379 236 Coils Coil 81 108 - -
Csa06g01379 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa06g01379 236 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01379 Csa-Chr6:11768855 Csa06g03736 Csa-Chr6:29814029 9.10E-94 dispersed
Csa06g01379 Csa-Chr6:11768855 Csa01g02284 Csa-Chr1:19982103 2.77E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32012 PF01486 K-box 5.40E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01379 K09264 - csv:101217987 443.351