Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01386 | ATGCAGCAAGATCAAAGCAAAAAGAATTCAACCGAAGTGGAGTTCTTTTCTGATTATGGTGATGCCAGTAGATACAAAATTCAGGAAGTAATTGGCAAAGGAAGCTATGGGGTTGTCTGTTCTGCAATTGACACCCGCACCGGTGACAAGGTTGCAATAAAGAAGATTCACAATATCTTTGAGCATATATCTGATGCGGTTAGAATTCTTCGTGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGATTTCAAAGACATCTATGTTGTTTTTGAGCTGATGGAATCAGATCTCCACCAAGTTATTAAAGCAAACGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCTAATGTCTACCACCGTGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACCGAGCTCCGGAGCTATGTGGTTCATTTTTCTCGAAGTATACACCTGCAATTGATATATGGAGTATTGGTTGCATATTTGCCGAAGTATTGATGGGGAAACCACTTTTTCCTGGTAAAAACGTTGTACACCAGCTCGATTTAATGACGGATCTCCTTGGAACTCCTTCATTAGATACAATTTCCAGGGTACGTAATGACAAGGCTAGAAGATATTTAACTACTATGAGAAAAAAGCAGCCGGTGCCATTTTCTCAAAAGTTCCCTAATGCAGATCCTTTAGCACTGAGGCTACTGGAAAGACTGCTTGCTTTTGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGGTTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAAATGGAATTTGAATTTGAGAGACGGAGGGTCACTAAAGAAGACATTCAGGAGCTAATCTTCCGGGAGATACTAGAATATCATCCTCAGCTACTAAAAGACTACATGAATGGGACTGAGAGAACAAATTTTCTATATCCAAGTGCTGTCGATCAATTTAGAAAGCAGTTTGCTCATCTGGAGGAAAATGGTGGTAAAAGTGCACCGGTAATTCCTCTTGACAGAAAGCATGTGTCCCTTCCAAGGTCAACAGTTGTTCACTCGAACCCAGTCTATTCTAAGGACCAAGTAAACAATATACCTCTCCAAGATGGCAAGATCTCTGAAGACGCATACAGCAAAAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCGAGGACCATGCAGGCACCACAAAAAATCCCGTTTGCAGCTAAGCCTGGAAGAGTGGTTGGACCGGTTATAGCAGACGAGAATGGGAGGCTAGTTAAGGAACCATATGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCTATTGTTGGAAATCAAGAAAGATCTGCAGCAGAAACAAAACTTGATATTTCTTTAAGGGCCGCTAAGCAAGCTTCCCAGTGCGGCATGGCTTCGAAATTAGGATCAGATATAGCCATCAGCATTGACTCAAACCCTTTTTACATGACACGTGCCGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCAATGCAAACTTTCTGCAGGCCAAAGCCGCCCAATACGGTGGTCTTAGTGCAGCAACAGCCACCACCACATCGGTTGCTCACAGAAAGGTGGTTGCTGGTCAGTTTAACATGACAAAGATGTACTAG | 1863 | 41.71 | MQQDQSKKNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVNNIPLQDGKISEDAYSKNSRDSEGRLTNISRTMQAPQKIPFAAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYHQKPIVGNQERSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISINANFLQAKAAQYGGLSAATATTTSVAHRKVVAGQFNMTKMY* | 621 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11833552 | 11837974 | - | CsaV3_6G015840.1 | Csa06g01386 | 533013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01386 | 620 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 9 | 495 | - | - | |
Csa06g01386 | 620 | Pfam | Protein kinase domain | 25 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01386 | 620 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 320 | IPR011009 | - | |
Csa06g01386 | 620 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 55 | IPR017441 | GO:0005524 | |
Csa06g01386 | 620 | SMART | serkin_6 | 25 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01386 | 620 | ProSitePatterns | MAP kinase signature. | 60 | 163 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Csa06g01386 | 620 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 9 | 495 | - | - | |
Csa06g01386 | 620 | Gene3D | Transferase(Phosphotransferase) domain 1 | 111 | 339 | - | - | |
Csa06g01386 | 620 | Gene3D | Phosphorylase Kinase; domain 1 | 40 | 362 | - | - | |
Csa06g01386 | 620 | ProSiteProfiles | Protein kinase domain profile. | 25 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01386 | 620 | CDD | STKc_TDY_MAPK | 24 | 361 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01386 | Csa-Chr6:11833552 | Csa06g02048 | Csa-Chr6:18328621 | 2.10E-119 | dispersed | |
Csa06g00186 | Csa-Chr6:1245447 | Csa06g01386 | Csa-Chr6:11833552 | 4.38E-29 | transposed | |
Csa06g00543 | Csa-Chr6:4664720 | Csa06g01386 | Csa-Chr6:11833552 | 0 | transposed | |
Csa04g00797 | Csa-Chr4:5580840 | Csa06g01386 | Csa-Chr6:11833552 | 0 | transposed | |
Csa06g01386 | Csa-Chr6:11833552 | Csa06g02422 | Csa-Chr6:21605091 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78356 | PF00069 | Pkinase | 1.50E-66 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01386 | - | - | csv:101216657 | 1211.05 |