Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01386 ATGCAGCAAGATCAAAGCAAAAAGAATTCAACCGAAGTGGAGTTCTTTTCTGATTATGGTGATGCCAGTAGATACAAAATTCAGGAAGTAATTGGCAAAGGAAGCTATGGGGTTGTCTGTTCTGCAATTGACACCCGCACCGGTGACAAGGTTGCAATAAAGAAGATTCACAATATCTTTGAGCATATATCTGATGCGGTTAGAATTCTTCGTGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGATTTCAAAGACATCTATGTTGTTTTTGAGCTGATGGAATCAGATCTCCACCAAGTTATTAAAGCAAACGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCTAATGTCTACCACCGTGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACCGAGCTCCGGAGCTATGTGGTTCATTTTTCTCGAAGTATACACCTGCAATTGATATATGGAGTATTGGTTGCATATTTGCCGAAGTATTGATGGGGAAACCACTTTTTCCTGGTAAAAACGTTGTACACCAGCTCGATTTAATGACGGATCTCCTTGGAACTCCTTCATTAGATACAATTTCCAGGGTACGTAATGACAAGGCTAGAAGATATTTAACTACTATGAGAAAAAAGCAGCCGGTGCCATTTTCTCAAAAGTTCCCTAATGCAGATCCTTTAGCACTGAGGCTACTGGAAAGACTGCTTGCTTTTGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGGTTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAAATGGAATTTGAATTTGAGAGACGGAGGGTCACTAAAGAAGACATTCAGGAGCTAATCTTCCGGGAGATACTAGAATATCATCCTCAGCTACTAAAAGACTACATGAATGGGACTGAGAGAACAAATTTTCTATATCCAAGTGCTGTCGATCAATTTAGAAAGCAGTTTGCTCATCTGGAGGAAAATGGTGGTAAAAGTGCACCGGTAATTCCTCTTGACAGAAAGCATGTGTCCCTTCCAAGGTCAACAGTTGTTCACTCGAACCCAGTCTATTCTAAGGACCAAGTAAACAATATACCTCTCCAAGATGGCAAGATCTCTGAAGACGCATACAGCAAAAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCGAGGACCATGCAGGCACCACAAAAAATCCCGTTTGCAGCTAAGCCTGGAAGAGTGGTTGGACCGGTTATAGCAGACGAGAATGGGAGGCTAGTTAAGGAACCATATGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCTATTGTTGGAAATCAAGAAAGATCTGCAGCAGAAACAAAACTTGATATTTCTTTAAGGGCCGCTAAGCAAGCTTCCCAGTGCGGCATGGCTTCGAAATTAGGATCAGATATAGCCATCAGCATTGACTCAAACCCTTTTTACATGACACGTGCCGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCAATGCAAACTTTCTGCAGGCCAAAGCCGCCCAATACGGTGGTCTTAGTGCAGCAACAGCCACCACCACATCGGTTGCTCACAGAAAGGTGGTTGCTGGTCAGTTTAACATGACAAAGATGTACTAG 1863 41.71 MQQDQSKKNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVNNIPLQDGKISEDAYSKNSRDSEGRLTNISRTMQAPQKIPFAAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYHQKPIVGNQERSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISINANFLQAKAAQYGGLSAATATTTSVAHRKVVAGQFNMTKMY* 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11833552 11837974 - CsaV3_6G015840.1 Csa06g01386 533013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01386 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 495 - -
Csa06g01386 620 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01386 620 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Csa06g01386 620 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Csa06g01386 620 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01386 620 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa06g01386 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 495 - -
Csa06g01386 620 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Csa06g01386 620 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Csa06g01386 620 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01386 620 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01386 Csa-Chr6:11833552 Csa06g02048 Csa-Chr6:18328621 2.10E-119 dispersed
Csa06g00186 Csa-Chr6:1245447 Csa06g01386 Csa-Chr6:11833552 4.38E-29 transposed
Csa06g00543 Csa-Chr6:4664720 Csa06g01386 Csa-Chr6:11833552 0 transposed
Csa04g00797 Csa-Chr4:5580840 Csa06g01386 Csa-Chr6:11833552 0 transposed
Csa06g01386 Csa-Chr6:11833552 Csa06g02422 Csa-Chr6:21605091 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78356 PF00069 Pkinase 1.50E-66 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01386 - - csv:101216657 1211.05