Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01392 ATGGCTACCGAGGCGACCGAAGCCACGACTAAGTTCCAAAGTCCGGATTTTCGTCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTGTGGTATCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCCGGTTCAATCGCTGGTTCTGCTGAACATATGGCTATGTTCCCCATTGATACCGTCAAGACCCATATGCAAGCACTTGGCTCTTGTCCAATTAAATCTGTTGGAGTTCGACAAGCCCTTCGGTCAATTTTGAAGTCAGAGGGACCTGCTGGGTTTTATCGTGGTATTGGTGCTATGGGTCTTGGAGCTGGACCAGCACATGCTGTGTATTTTACAGTTTACGAGAATTGTAAGAAGTTTTTCTCTGGTGGGGATCCTAATAATTCTCTTGCTCATGCTGCTTCTGGGGTCTGTGCAACGGTGGCGAGTGATGCTGTGTTTACACCGATGGATATGGTTAAACAGCGGCTGCAGTTGAGTAATAATCCCTACAAGGGAGTTTTGGATTGTATCAAAAAGGTTCTTAGAGATGAGGGGTTTAAAGCATTTTATGCATCATACAGAACTACCGTGTTGATGAATGCACCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAAAGTGTAAATGATGAACAGTGGGTTGTTCATGCGACGGCTGGAGCTGTTGCTGGAGCTTCAGCTGCGTTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGCCAGGGTGTATGTGGATGCGACAGATTCAAAAGTGGGTCAATCAGGGATGTAATTCGAACAATACTCAAGAAGGATGGATACAGAGGGCTTATGAGGGGATGGGTTCCAAGGATGCTCTTTCATGCCCCAGCTGCAGCTATTTGCTGGTCGACATATGAAGCGTTAAAATCCTTCTTCCACGATCTCAATGGTGGCAGCAGCCACAACGGTACCTGA 996 46.79 MATEATEATTKFQSPDFRPVPSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSAEHMAMFPIDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSLAHAASGVCATVASDAVFTPMDMVKQRLQLSNNPYKGVLDCIKKVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWVVHATAGAVAGASAAFVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVIRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFHDLNGGSSHNGT* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11913493 11917446 - CsaV3_6G015900.1 Csa06g01392 533019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01392 331 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Csa06g01392 331 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Csa06g01392 331 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Csa06g01392 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Csa06g01392 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Csa06g01392 331 PANTHER MITOFERRIN-1-RELATED 5 325 - -
Csa06g01392 331 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Csa06g01392 331 Gene3D Mitochondrial carrier domain 133 330 IPR023395 -
Csa06g01392 331 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 325 - -
Csa06g01392 331 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Csa06g01392 331 Pfam Mitochondrial carrier protein 228 320 IPR018108 -
Csa06g01392 331 Pfam Mitochondrial carrier protein 133 219 IPR018108 -
Csa06g01392 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Csa06g01392 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01643 Csa-Chr4:15766687 Csa06g01392 Csa-Chr6:11913493 4.43E-154 dispersed
Csa05g03044 Csa-Chr5:30566402 Csa06g01392 Csa-Chr6:11913493 2.58E-10 dispersed
Csa06g00500 Csa-Chr6:4218503 Csa06g01392 Csa-Chr6:11913493 1.01E-37 dispersed
Csa06g01392 Csa-Chr6:11913493 Csa03g00847 Csa-Chr3:7167606 4.20E-19 dispersed
Csa06g01896 Csa-Chr6:17096834 Csa06g01392 Csa-Chr6:11913493 2.18E-10 dispersed
Csa07g00198 Csa-Chr7:1604053 Csa06g01392 Csa-Chr6:11913493 3.37E-18 dispersed
Csa06g01392 Csa-Chr6:11913493 Csa06g01877 Csa-Chr6:16928041 5.61E-09 transposed
Csa06g01392 Csa-Chr6:11913493 Csa05g00746 Csa-Chr5:5137787 2.28E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01392 K15113 - csv:101215924 669.077