Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01395 ATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGA 489 42.13 MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT* 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11927402 11928480 + CsaV3_6G015930.1 Csa06g01395 533022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01395 162 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Csa06g01395 162 Coils Coil 86 106 - -
Csa06g01395 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 149 - -
Csa06g01395 162 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Csa06g01395 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01169 Csa-Chr6:9817253 Csa06g01395 Csa-Chr6:11927402 1.60E-52 dispersed
Csa06g01395 Csa-Chr6:11927402 Csa06g01663 Csa-Chr6:14608411 4.37E-48 dispersed
Csa07g01185 Csa-Chr7:11638640 Csa06g01395 Csa-Chr6:11927402 4.01E-49 dispersed
Csa02g02261 Csa-Chr2:20240741 Csa06g01395 Csa-Chr6:11927402 7.20E-13 transposed
Csa05g00849 Csa-Chr5:6402429 Csa06g01395 Csa-Chr6:11927402 2.63E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32013 PF03195 LOB 2.30E-39 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01395 - - csv:101207667 328.561