Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01395 | ATGGGAGTCGGTTCATCACCCTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGCATTTTTGCTCCTTATTTCCCTCCTCATGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGGTTCCAGTAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCGAGAATGCAAGATCCAGTGTATGGTTGTGTAGGAAAAATCTTGTTTTTGCAAAACGAAGTGTCTCAATTAGAAATTCAACTAGGGGCAGCTCGAGCGGAGATTTTGATGTTACAAATGCGACAACAACAAGAAGCCTCGATAACATTTCCGATGACGACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTCTCTCAAATGCCGATTCTTCTAATTCCTTCCATGTTTTTCAAGCAGCAGATGATCATTACCCTTTATGGACTTGA | 489 | 42.13 | MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASITFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT* | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11927402 | 11928480 | + | CsaV3_6G015930.1 | Csa06g01395 | 533022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01395 | 162 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Csa06g01395 | 162 | Coils | Coil | 86 | 106 | - | - | |
Csa06g01395 | 162 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 149 | - | - | |
Csa06g01395 | 162 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - | |
Csa06g01395 | 162 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 1 | 149 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01169 | Csa-Chr6:9817253 | Csa06g01395 | Csa-Chr6:11927402 | 1.60E-52 | dispersed | |
Csa06g01395 | Csa-Chr6:11927402 | Csa06g01663 | Csa-Chr6:14608411 | 4.37E-48 | dispersed | |
Csa07g01185 | Csa-Chr7:11638640 | Csa06g01395 | Csa-Chr6:11927402 | 4.01E-49 | dispersed | |
Csa02g02261 | Csa-Chr2:20240741 | Csa06g01395 | Csa-Chr6:11927402 | 7.20E-13 | transposed | |
Csa05g00849 | Csa-Chr5:6402429 | Csa06g01395 | Csa-Chr6:11927402 | 2.63E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32013 | PF03195 | LOB | 2.30E-39 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01395 | - | - | csv:101207667 | 328.561 |