Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01420 ATGGACGGTGGATTTAAACGAGGGGGATTGGGATTTTGCATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATTTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAGGCGAGTTTGTGGTATGGGAGGATTTTTGGTTCTAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGCCTGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTCGATGTTAATAGAGCTTGTGGTTCAGATGGCGTAACGACTCTTCACTGTGCTGTTGCTGGTGGTTCTGCTGTTGTGGATCAGGTTGTCAAACTCTTGCTCGATGCTTCCGCTGATGTAAGTGCTGTTGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTTTTATTCAAGGAAAAAAACACTACAACAATTGCTAAATGGTCATGAAGGTCTTAGCTCATCTGAGGCAATATTTTACGAGAGGGAAACTTTGGAGCCACTGGAGCTTTCAACCCTTCGAGCTTCACGAGATGGGACGGAGAAGAAAGAGTATCCAGTTGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACGGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCGCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGCGAAAATGCAAGGAGGCGGGATCCAAGAAAATATCATTACAGCTGTGTCCCGTGTCCGGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAGGATGAAACCGGATGTACCAGAAAAGTCTGTTTCTTTGCTCACAAGCCAGAAGAGCTCCGCCCCTTGTATGCTTCAACTGGTTCTGCTGTACTGTCTCCAAGATCAATATGTGGTTCTTCACTAGACATCGCGTCGATCAGTTCACTTACCCTTGGTTCTCCTTCAGCTTTGATACCTCCTTCGTCAACTCCACCTTTAACTCCTTCTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAGTGTAATATTGCTCCCCCAACCCTGCACCTTCCAGGTAGCAGGCTAAAGGCTTCCTTGAGCGCAAGAGACGTGGATTTAGATGTCGAGTTACTTGGTCTCGAAAGTCAACGCCGTAGACAACAACAGCTAATGGATGAGATGTCCTGTCTATCTTCCCCTTCTAGATGGAACAATGGCTTACCAACTCCTGCATCTTTTCCTTCCCCAAGGAGTAGAAATGGAGAACTGAATGGACTTGGAGGCATGAAGCAGACCAACCTCGAGGACTTTTTCGGGTCTGTAGATCCTGCAATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTGCAGTCCCCTTCTGGAATCCAGATGCGCCAAAGCCTCAATCAGTCTTTCCTCTCGAGCTATGGTAACAGCATTGGGTCCCCTCCTCCAAGGTTGTCTCAACCATCCGTGTCTACTGCAGCCAGCGTTTTGAGTTCTAGAGCTGCTGCTTTTGCTAAGCGTAGCCAGAGCTTTATCGAACGTAGTATGGTGAGCCGCCATACGGGACTATCACCCCCAGGTACATCCACAACTGCCATGCCTTTGAACCTGTCTGATTGGGGTTCGCCTGACGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTGAACAAGTTAAAGAAGTCCGCATCATTTGGGATTCGAAACAATTGCACCAGTTCTCCAGTGACGTCCACGATGCACACTACTGCTCCCGAGCCAGATGTGTCCTGGGTTCAGTCCCTGGTGAAGGATGCTCCATCCGAAAATGCTGTGCAGTTGAGTATGGACGAGCAGCAGCAGCTGCTGCTTTGTCATCTCAATAATGGCGATTCAAAGCAAATGTACATGGAACAGGAACAGTTGGTTGCTTGA 2031 46.77 MDGGFKRGGLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLSYILHSGRVDVNRACGSDGVTTLHCAVAGGSAVVDQVVKLLLDASADVSAVDANGNRPGDLIAPDFTSAFYSRKKTLQQLLNGHEGLSSSEAIFYERETLEPLELSTLRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISSLTLGSPSALIPPSSTPPLTPSGVSSPMGGTMWQTQCNIAPPTLHLPGSRLKASLSARDVDLDVELLGLESQRRRQQQLMDEMSCLSSPSRWNNGLPTPASFPSPRSRNGELNGLGGMKQTNLEDFFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQSLNQSFLSSYGNSIGSPPPRLSQPSVSTAASVLSSRAAAFAKRSQSFIERSMVSRHTGLSPPGTSTTAMPLNLSDWGSPDGKLDWGIRGEELNKLKKSASFGIRNNCTSSPVTSTMHTTAPEPDVSWVQSLVKDAPSENAVQLSMDEQQQLLLCHLNNGDSKQMYMEQEQLVA* 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12114956 12118381 - CsaV3_6G016180.1 Csa06g01420 533047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01420 676 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 14 674 - -
Csa06g01420 676 ProSiteProfiles Ankyrin repeat profile. 94 129 IPR002110 GO:0005515
Csa06g01420 676 Pfam Ankyrin repeats (3 copies) 57 127 IPR002110 GO:0005515
Csa06g01420 676 ProSiteProfiles Ankyrin repeat region circular profile. 94 128 - -
Csa06g01420 676 SMART c3hfinal6 289 312 IPR000571 GO:0046872
Csa06g01420 676 SMART c3hfinal6 254 280 IPR000571 GO:0046872
Csa06g01420 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 279 IPR000571 GO:0046872
Csa06g01420 676 Gene3D - 24 158 IPR036770 -
Csa06g01420 676 Gene3D - 255 317 - -
Csa06g01420 676 SMART ANK_2a 94 126 IPR002110 GO:0005515
Csa06g01420 676 SMART ANK_2a 59 89 IPR002110 GO:0005515
Csa06g01420 676 ProSiteProfiles Zinc finger C3H1-type profile. 259 281 IPR000571 GO:0046872
Csa06g01420 676 PANTHER UNKEMPT FAMILY MEMBER 14 674 IPR045234 -
Csa06g01420 676 SUPERFAMILY Ankyrin repeat 56 134 IPR036770 -
Csa06g01420 676 MobiDBLite consensus disorder prediction 429 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01420 Csa-Chr6:12114956 Csa07g00484 Csa-Chr7:3508522 5.41E-46 dispersed
Csa03g02908 Csa-Chr3:27768387 Csa06g01420 Csa-Chr6:12114956 2.00E-159 transposed
Csa03g03622 Csa-Chr3:32257914 Csa06g01420 Csa-Chr6:12114956 3.30E-164 transposed
Csa05g00823 Csa-Chr5:6068842 Csa06g01420 Csa-Chr6:12114956 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32016 PF12796 Ank_2 1.00E-06 CL0465 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01420 - - csv:101213761 1332.01