Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01433 ATGACCGCCATTACTCGAGCAAGTCAGCGCAAGATCGAGAGTGTAGTGGAGACCAATTCCCCGAAGCGGAAACCGAGATCCAGTAGTGTGCAGAGGCAACGAAGCCCTGCCTCTACCCCGATCAATTGGAAATCACCTCGTCGGTGTCTTAATTCGAGTCCAAAAACCCCTCCAGAGAGCGATGGGAAAGCGGTTAATGGTGTCTTTTCTAACTCACTTACTTCACCGATAAGATGCTTGTTGAAGGAACTTATTGTCAAACCAGATTGGAATCCTAAAGATATCGAACATGTAAAAACTGCGAAAGAAGCATTGCACATATCGACAGCTCCAACAACAATCATGTGCCGTGAAGATGAACAAAGTAAAATCTTCAATTTCTGCAAGGCTAGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAGAAAGTGAAAGATCAGCTGGCCGCTTGGGCCGAAGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCCATAAACTGCACTTCCTTAGCTAATACATCTTATATTTTCACTAAGATCATGGGTGAAACCCAACCAAAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTGTACTCCCAGAAGGCAGAGTCATCTTGCGTGAAAATGAAGTTGATAATAGCTGATGAACTGGATTATTTAATTACAAAAGATAAAGCAGTGTTACATGATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATCTTGATAGGAATTGCAAATGCTATTGACTTAGCTGATCGCTTTCTTCCAAGACTTCAGGCATTGAATTGCAAACCTCAGATTGTAACTTATAGGGCGTATTCCAAGGAACAGATCCTCAAAATTCTTCAACAAAGGTTAACTAGGCTTCCTTTCGTTGTCTTCCACTCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTGTCTGGAGACATGAGGAAAGCTCTATGTGTTTGCCGGAATGCCATTGAATTGTTAGAGGTGGAGATCAAAGCATCCTCAAAGGAGCTGAACCATGATGACGCATGTGATACTTCAGCACCACCTGAGCCTGTCAAAAGATCAGAGTCTCAGATTGTGAGGTTGGACCATATGGCCGTGGCCTTAGCTAAGACCTTTAAATCACCAGCAGTGGAAACCATACAATCGCTTCCTCAGCATCAACAGATCATTTTGTGCTCTGTTGTGAAACTTGTTCGCGGAGGAAAGAAGGATACAACTATAGGAGAGCTAAACAAATCATATATAGACATGTGTAAATCAACACTAATCCCACCAGTGGGTAGTTTGGAACTTTCAAATATGTTCACGGTGCTAAACGACCAGGGGCTTCTCAAACTTGGCCAATCTCGTGACAACAAAACGAGGCGTGTGTTGTTGAAAGTCGACGAAGCCGATGTCACATTCGCATTACAGGGAATACGCTTCTTTCGAAATTGCCTTGCAGTAAATTAA 1524 43.24 MTAITRASQRKIESVVETNSPKRKPRSSSVQRQRSPASTPINWKSPRRCLNSSPKTPPESDGKAVNGVFSNSLTSPIRCLLKELIVKPDWNPKDIEHVKTAKEALHISTAPTTIMCREDEQSKIFNFCKASVEQEKAGSLYVCGCPGTGKSLSMEKVKDQLAAWAEESGLQLPDILSINCTSLANTSYIFTKIMGETQPKKKRNGSLTPLQHLQRLYSQKAESSCVKMKLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQIVTYRAYSKEQILKILQQRLTRLPFVVFHSQALELCARKVAAVSGDMRKALCVCRNAIELLEVEIKASSKELNHDDACDTSAPPEPVKRSESQIVRLDHMAVALAKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYIDMCKSTLIPPVGSLELSNMFTVLNDQGLLKLGQSRDNKTRRVLLKVDEADVTFALQGIRFFRNCLAVN* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12225834 12234099 - CsaV3_6G016310.1 Csa06g01433 533060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01433 507 MobiDBLite consensus disorder prediction 1 67 - -
Csa06g01433 507 PIRSF Cdc6 2 507 IPR016314 GO:0006270|GO:0051301
Csa06g01433 507 CDD Cdc6_C 408 490 IPR015163 -
Csa06g01433 507 Pfam CDC6, C terminal winged helix domain 415 493 IPR015163 -
Csa06g01433 507 Pfam AAA lid domain 317 351 IPR041083 -
Csa06g01433 507 CDD AAA 120 280 - -
Csa06g01433 507 SUPERFAMILY Winged helix DNA-binding domain 401 503 IPR036390 -
Csa06g01433 507 Gene3D - 285 404 - -
Csa06g01433 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 352 IPR027417 -
Csa06g01433 507 SMART Cdc6_C_2 415 494 IPR015163 -
Csa06g01433 507 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 13 504 - -
Csa06g01433 507 Pfam AAA domain 135 255 IPR003593 -
Csa06g01433 507 Gene3D - 94 284 IPR027417 -
Csa06g01433 507 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 13 504 - -
Csa06g01433 507 SMART AAA_5 136 286 IPR003593 -
Csa06g01433 507 Gene3D - 405 495 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01433 Csa-Chr6:12225834 Csa06g03859 Csa-Chr6:30586199 3.05E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01433 K02213 - csv:101205741 981.474